Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04716 ATGAGAAAAGGAAAATCCTGCTCCCCTTCTGCGGAACCAAAATCCCTTATAAGCATCCTCCAAATTGTTATGGTAGTTGTGCTGCTATTGCATCATCAAACATGCGATGCAACAAGTAGCAATAAGCAAACATATTGTCCACCTTCTTCATGCGGCAAAATCACAATCATAAAACATCCTTTCCGACTTATGGATGACCCAACAACCTGCGGTGATCCGAGGTACGAGTTATCCTGCGAAAACAACATCACAATGTTAACTCTGTTTTCTGGTAAATACTATGTGAAATCAATCGACTACAAAAACTACACAATTCGGTTAGTTGATCCCGGAATTGAAGAGGGTGATTGCTCCTCTATTCCTCGCTATTACTTAAATGGAAACAATTTCACTTACAGTTATTCTATTTCCACCGATAGATACAACGAGGATCCATATCAAATCGATGGCCGGTTTGGGTTCCAGGACATAATTTACTTGAATTGTAGCAAACCAGTGAAGGACGATCCTGAATATCTGGATACAGCTCTGTGTAGAGTCAACTTGGACTCCAAAAGCCATGTTTACGCTTTTGTGGGGGGTTACTTTTACGTTGGGAAATTAAAAGATTATTGCCGAGTGAAGCTTGTTGCTATGTCATCGATGTTAGCTTTTCCTAATATCAGTGTCAGTGTCAGTGTCAGAGATGGTGTACCGGATCGACAACTTTCATACCAGAAAATCCATGAAATGCTACTCTATGGATTTGAGATATCATGGATAAGTGCTGCTTGTAGAGATTCTTGCGGCGATAACGAATACTGCATCTTATCAGAGATAACCAGAGGAGATTTTGAATGTCATCAATCCAAATATATTGATAAATGCAGTTATCCATTCGACCCATTCGGACCTGAACGGAATTGCAACCACATATTGACAAAGCTGCTCATATTCGTGGAAGGAGCATTAAAAATAGTTGGTACGACGAAAACTTATAAAGTATCAAAGCAAGAACTTTCTATTTCTAAAACTGGATTGGAGATAGGAAAAATCATAGGCAGGTATCTCTTGCCGCCGTGTATAGTAAGATATGTAACGGGCCTCTTGGTTTTCTGTGTGTTAATGATATATATATGTCAAAGAAGGCATTTATCAATATATGAAAATATTGAAGTATTTCTTCAGACAAATACTTTGATTCCAATAAGGTATTCATACAAAGAAATAAAGAATATGACTAGAAGTTTCAGAGACAAGCTGGGTGAAGGTGGTTTTGGAGCTGTTTATAAAGGAAAGCTACGCAGCGGACAACTTGTGGCCATAAAGATGTTAGGTAAATCAAAGGGCAATGGACAAGATTTTATTAATGAAGTAGGAACCATAGGAAGAATACATCACACCAATGTGGTTCGACTTATTGGATTTTGTTTTGAAAGATCAAAACGAGCTCTTGTTTATGAATTCATGCCCAATGGTTCTCTTGATAAATATATTTCTTCTAAAGAGAATGCCATCTCTCTAACTTATAACCAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGTATTTCTTATTTGCATCAAGGATGTGACATGCAAATTTTGCATTTCGATATCAAGCCACATAACATCCTTCTCGATGAAAACTTCATCTCAAAAGTGTCAGACTTTGGTCTTGCCAGGCTTTATCCTAATGACATTAGCATTGTCACTTTGACTGCAGCAAGAGGTACAATTGGTTACATGGCTCCTGAATTATTTTATCAAAATATTGGAGGAGTTTCCTATAAGGCTGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGTAAGAGAAGAAATTTAAATCCACATGCAGATCGTTCAAGCCAGCTTTTCTTTCCTTTTTGGATCTACAATCAATTGGTTGAAGAAAAGGACATAGAAATGGATGAAATTTCAAATGAAGAAATGATTAATGTGAAAAAGATGTTCAAAACTGCATTATGGTGTATACAATTAAAACCAAATGATCGTCCTCCAATGGACAGAGTAATAGAGATGCTTGAAGGAAACATTGAAAATATTGAGATGCCTCCAAAACCTTCTCTATATCCAAATGAAGTTATTCAGAAAGATCTTGAAGTAACCTCTAATGAAATTGAGTCAGATGTTGCTATTGACTCTGTTAGTTTTTTGGAGGAAACTAGCGCATAG 2184 0.3704 MRKGKSCSPSAEPKSLISILQIVMVVVLLLHHQTCDATSSNKQTYCPPSSCGKITIIKHPFRLMDDPTTCGDPRYELSCENNITMLTLFSGKYYVKSIDYKNYTIRLVDPGIEEGDCSSIPRYYLNGNNFTYSYSISTDRYNEDPYQIDGRFGFQDIIYLNCSKPVKDDPEYLDTALCRVNLDSKSHVYAFVGGYFYVGKLKDYCRVKLVAMSSMLAFPNISVSVSVRDGVPDRQLSYQKIHEMLLYGFEISWISAACRDSCGDNEYCILSEITRGDFECHQSKYIDKCSYPFDPFGPERNCNHILTKLLIFVEGALKIVGTTKTYKVSKQELSISKTGLEIGKIIGRYLLPPCIVRYVTGLLVFCVLMIYICQRRHLSIYENIEVFLQTNTLIPIRYSYKEIKNMTRSFRDKLGEGGFGAVYKGKLRSGQLVAIKMLGKSKGNGQDFINEVGTIGRIHHTNVVRLIGFCFERSKRALVYEFMPNGSLDKYISSKENAISLTYNQMYEISLGVARGISYLHQGCDMQILHFDIKPHNILLDENFISKVSDFGLARLYPNDISIVTLTAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMEMASKRRNLNPHADRSSQLFFPFWIYNQLVEEKDIEMDEISNEEMINVKKMFKTALWCIQLKPNDRPPMDRVIEMLEGNIENIEMPPKPSLYPNEVIQKDLEVTSNEIESDVAIDSVSFLEETSA 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04716 727 FunFam serine/threonine-protein kinase PBS1-like 381 482 - -
Vivi4g04716 727 Pfam Wall-associated receptor kinase galacturonan-binding 46 109 IPR025287 GO:0030247
Vivi4g04716 727 FunFam PR5-like receptor kinase 483 690 - -
Vivi4g04716 727 SUPERFAMILY Protein kinase-like (PK-like) 392 679 IPR011009 -
Vivi4g04716 727 ProSitePatterns Protein kinases ATP-binding region signature. 414 436 IPR017441 GO:0005524
Vivi4g04716 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Vivi4g04716 727 Pfam Protein tyrosine and serine/threonine kinase 410 678 IPR001245 GO:0004672|GO:0006468
Vivi4g04716 727 SMART serkin_6 408 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04716 727 PANTHER RUST RESISTANCE KINASE LR10-RELATED 381 699 IPR045874 GO:0004672
Vivi4g04716 727 ProSiteProfiles Protein kinase domain profile. 408 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04716 727 Gene3D Phosphorylase Kinase; domain 1 385 482 - -
Vivi4g04716 727 Gene3D Transferase(Phosphotransferase) domain 1 483 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04716 Vivi-Chr4 175965115 175976740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04716 25 720 Receptor kinase-like Gene Family AT5G38260 34.318 1.19e-110 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04716 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04716 - - tpra:123893228 900.197