Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04715 ATGTCTTGGAAAATGCTTGTGAACCTAACTGTTATAATGATTCTCCTATGGCTATACCCTCTTCCTTGCCTAACAGAAACAAATCACCAATGTGGCTTCTCATCTTGTGGCAATATACAAAATATCACCTACCCTTTTCGTCTACGAGGTGAACCTGAAAACTGTGGAGATCCAAACTATGAACTTTCTTGCGAGAACAATCAAACAATACTAAATCTCGACAATGGAAAATACTTCGTAGAAGCCATTAACTACAATAATTCCACAATAAGGATAACAGATTCAGGTGTCAACAAACACAATTGCTCTTCCATTCCTCTCTACTCATTAACAAATGAAAGTTTCACCACTGGAAAACCTTATAGTTTGTTAAATGAGAATAATAACTTAGTAACGGTAGCGTTTATAACCTGTGCAGCCTCGGTTATTTCTCCTATTTATATGGATACTTCATCTTGTATGAAAGGATTGATCAACTCTTCCAACTATGCTGTATTTGGTGACTTGAAAATCTCTGAGCTGGAAGATTCATGCAGCATACTTGTTATGGTTATGATTTCAAATTTGAACAAAGGCGATAAAAACCTTTCATATGTGAAAATCCATCAGCAACTTGTTTATGGTTTGGAGCTTTCTTGGAGTGAAATATTCTGCAAAGAATGTCAAGGTAGGGGACACTGTAAATTGAACAACAATAATGAAGTCATCGGTTGTTCAAAAGGCCGACCATGTAGTCGTGACGATATATCCTCTTTTAAATGTGCTTTAGAAGTGGTAATCCATGCAGTCAAAGATGTGACAGAAGGTCCTCACAAATTAGGCGGTATCATCGGAATAATTCTTCTGATAAGAATCATAGGAGGATTACTATTTATCCCAATGTACATGGTATATAAATGGAGAAGGAGGCATTTATCTGCGTATGATTCGGTAGAAGAGTTTCTCAAAACTCACAACAATCTCATGCCAATAAGATACTCTTATTCAGACATTAAAAAAATGACAAAAGGATTCAAGGATAAACTCGGCGAAGGAGGCTATGGTTCTGTTTACAAAGGACAACTTCGCAATGGTCACCTCGTAGCAATCAAGATGTTAGGCGGAAAATCGAGAGCAAATGGACAAGAATTCATCAATGAAGTTGCTACCATTGGAACAATCCACCATGTTAATATTGTGCATCTTATTGGCTTTTGCGTTGAGAAATCAAAAAGAGCACTTGTTTATGAGTTCATGCCAAATGGTTCTCTTGAAAAACATATTTTTTCAAGAGAACGAATGGGTTCTCTGAGTTGCGAGAAAATGTTTGATATAGCGCTTGGTGTAGCGCGCGGTATTGAATATCTGCATAGAGGTTGTGACATGAGAATTTTGCATTTTGACATAAAGCCTCATAACATTCTTCTTGATGTAAACTTTACTCCAAAGGTTTCGGATTTTGGACTAGCAAAGCTATATCCAATTGACAATAGCATTGTGTCGCTGACCGCTGCAAGAGGAACTATGGGATACATGGCGCCGGAGTTGTTCTATAAGAACATTGGAGGAGTATCATATAAAGCAGATGTTTATAGCTTTGGAATGTTGTTAATGGAAATGGTGAGTAGGCGAAAGAACATGAATGAGGGCGAGGATCGTAAGAGCCAGGTTTATTTCCCTTCTTGGATTTACGACCAATTTAGTGAAGGGAATGAAATAGAAATGGGGAATGGAACGGAAGAGGAGGAGAGGATATCAAAGAAGATGATAATAGTTGCGTTATGGTGTATACAGATGAAACCTAGTGATCGTCCTTCGATGAACAAAGTAGTTGAGTTGCTTGAAGGAGACGTTGAGGCCTTAGAAATGCCTCCTAAGCCATTTCAAACTCCGAAAGGAATTCCTGGACCAGGCATTGGACAATTCAGAAATCTACCTTGGTTGCTACCTGGGGAATCTACAAATTCACTTACCATTGTTATAAATAGACGTTAA 1974 0.3804 MSWKMLVNLTVIMILLWLYPLPCLTETNHQCGFSSCGNIQNITYPFRLRGEPENCGDPNYELSCENNQTILNLDNGKYFVEAINYNNSTIRITDSGVNKHNCSSIPLYSLTNESFTTGKPYSLLNENNNLVTVAFITCAASVISPIYMDTSSCMKGLINSSNYAVFGDLKISELEDSCSILVMVMISNLNKGDKNLSYVKIHQQLVYGLELSWSEIFCKECQGRGHCKLNNNNEVIGCSKGRPCSRDDISSFKCALEVVIHAVKDVTEGPHKLGGIIGIILLIRIIGGLLFIPMYMVYKWRRRHLSAYDSVEEFLKTHNNLMPIRYSYSDIKKMTKGFKDKLGEGGYGSVYKGQLRNGHLVAIKMLGGKSRANGQEFINEVATIGTIHHVNIVHLIGFCVEKSKRALVYEFMPNGSLEKHIFSRERMGSLSCEKMFDIALGVARGIEYLHRGCDMRILHFDIKPHNILLDVNFTPKVSDFGLAKLYPIDNSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMVSRRKNMNEGEDRKSQVYFPSWIYDQFSEGNEIEMGNGTEEEERISKKMIIVALWCIQMKPSDRPSMNKVVELLEGDVEALEMPPKPFQTPKGIPGPGIGQFRNLPWLLPGESTNSLTIVINRR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04715 657 FunFam PR5-like receptor kinase 412 619 - -
Vivi4g04715 657 ProSiteProfiles Protein kinase domain profile. 336 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04715 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Vivi4g04715 657 Pfam Protein kinase domain 339 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04715 657 CDD STKc_IRAK 342 609 - -
Vivi4g04715 657 SMART serkin_6 336 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04715 657 Pfam Wall-associated receptor kinase galacturonan-binding 34 94 IPR025287 GO:0030247
Vivi4g04715 657 PANTHER RUST RESISTANCE KINASE LR10-RELATED 308 623 IPR045874 GO:0004672
Vivi4g04715 657 FunFam serine/threonine-protein kinase PBS1-like 306 411 - -
Vivi4g04715 657 SUPERFAMILY Protein kinase-like (PK-like) 317 607 IPR011009 -
Vivi4g04715 657 Gene3D Phosphorylase Kinase; domain 1 310 411 - -
Vivi4g04715 657 Gene3D Transferase(Phosphotransferase) domain 1 412 621 - -
Vivi4g04715 657 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04715 Vivi-Chr4 175959890 175962535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04715 35 620 Receptor kinase-like Gene Family AT1G66910 35.703 1.79e-108 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04715 Pkinase 7.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04715 - - cam:101507916 1123.61