Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04714 ATGTGGAGCAATTACTCTACACTTGTTCTTCCATTCTTTTGCTTCATTTTGAGTGCAAATTACTATAGTAACCTTGCTTCAGCTAATACTGAATGCATGAAAACAAGGTGTAATCACAAAGATGCTCCCACTATTCAATACCCTTTTAGACTCCAAAACATTCAACCACAAAATTGTGGAAAAACTGGTTTTGATCTTTCATGCAATGAGAATCACCAAACCATACTAAAATTTCCAACTTCAATCAATTTTATTGTCAACAAAATTGATTACAAGTCCCAAAATATTCATGTGACTGACCCAAATGGATGTCTTCCAAAGCTCCTTTCAAAACTCAATCTATCATCCACCCCTTTTCATTTCATTGACAAATCCAATTCAAATTCAAATTCCAATTATACACTCTTCAATTGTTCATCCATGAACACTGCTTTACAATCTTATTACCCTTCCATTAAATGTCTTTCTTCTGATGAATACCGAGTTTATGCATTGGACTCCACACTTCAAATTAAGGATGTTCCTTTGACATATTGTACCAAGTTGTATGACATGTCTTTTGTTCCAGAAGAGGTTGTTTTAAGCCATGGTGATGATCTTGTTTTAGGATGGGATACAAGTTGTGGCAATCAAAGTGAAACAAAACATGAATGTAACAAAAATGTCAAGAAATCTAAAGGAGCAGGGAGAAAAATGGAAATTCTAGTACCGATACTATCATGTCTTGGAATTTTACTACTAGTCACAGCGTTATATCACGTTCGATACACAACTCAAAAAGACAAAGAAAATGAAGCAAGAATAGAAAAGTTCTTAGAAGATTATAGAGCATTGAAACCTACAAGGTATTCCTATTCAGACATAAAAAGGATCACAAACAATTTCAAGAACGAACTTGGACAAGGAGCATATGGAACGGTGTACAAAGGTAAACTATCTAGCGATGTATATGTCGCGGTCAAGCTTCTCAAAACATCGACAGGAAATGGACCTGAGTTCATCAATGAAGTAGGAACAATGAGTCAAATCCATCATGTTAATGTTGTTCACTTAGTTGGCTTCTGCGCGGACGGACATAAGCGAGCACTTGTTTACGAGTATTTACCAAATGGTTCGTTGCAGAAGTATATTTCCACGACGGATTTCAAAAACCATTTTTTGAGTTGGGAGAAGTTACAAGAAATCGCGCTTGGAATAGCGAAAGGGATTGAGTATCTTCACCAAGGGTGTGACCAGAGGATACTTCATTTTGATATAAAGCCACATAATATCTTACTTGACAATAACTTTACTCCTAAGATATCTGATTTTGGTTTGGCTAAGCTTTGTTCAAAGGATCAGAGCGCGGTTTCCATGACCGCGGCTAGGGGGACTATTGGTTACATAGCACCTGAAGTTTTTTCTAGGAACTTCGGGAATGTGTCGTATAAGTCTGATGTATATAGTTTTGGAATGTTGTTGCTTGAGATGGTCGGGGGGAGACAAAATGTAGATGTTGTAGACAAGGGAAGTGGTTTAGGGTATTTTCCGGAATGGATTTATAATTTGCTAGAGCAAGGGGATGATTTGAGTGAACATATTGAGGTGGAGAAATACGCGAAAATAGCAAAGAAACTTGCGATTGCGGGACTTTGGTGTATTCAGTGGCACCCGGTGGATCGTCCTTCAATGCAAGTTGTTGTTCATATGTTGGAAGGAGATGGAGGTAAGTTAAGTATGCCACCTAATCCATTTGCTTCTGCTGATCCTGCTATAATGAATGTGAGTTTAATTGGAAGACACTTTCATAGAGAGTGA 1797 0.3751 MWSNYSTLVLPFFCFILSANYYSNLASANTECMKTRCNHKDAPTIQYPFRLQNIQPQNCGKTGFDLSCNENHQTILKFPTSINFIVNKIDYKSQNIHVTDPNGCLPKLLSKLNLSSTPFHFIDKSNSNSNSNYTLFNCSSMNTALQSYYPSIKCLSSDEYRVYALDSTLQIKDVPLTYCTKLYDMSFVPEEVVLSHGDDLVLGWDTSCGNQSETKHECNKNVKKSKGAGRKMEILVPILSCLGILLLVTALYHVRYTTQKDKENEARIEKFLEDYRALKPTRYSYSDIKRITNNFKNELGQGAYGTVYKGKLSSDVYVAVKLLKTSTGNGPEFINEVGTMSQIHHVNVVHLVGFCADGHKRALVYEYLPNGSLQKYISTTDFKNHFLSWEKLQEIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDNNFTPKISDFGLAKLCSKDQSAVSMTAARGTIGYIAPEVFSRNFGNVSYKSDVYSFGMLLLEMVGGRQNVDVVDKGSGLGYFPEWIYNLLEQGDDLSEHIEVEKYAKIAKKLAIAGLWCIQWHPVDRPSMQVVVHMLEGDGGKLSMPPNPFASADPAIMNVSLIGRHFHRE 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04714 598 SUPERFAMILY Protein kinase-like (PK-like) 276 565 IPR011009 -
Vivi4g04714 598 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Vivi4g04714 598 Pfam Protein tyrosine and serine/threonine kinase 295 564 IPR001245 GO:0004672|GO:0006468
Vivi4g04714 598 Gene3D Phosphorylase Kinase; domain 1 266 367 - -
Vivi4g04714 598 SMART serkin_6 293 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04714 598 FunFam PR5-like receptor kinase 368 575 - -
Vivi4g04714 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Vivi4g04714 598 ProSiteProfiles Protein kinase domain profile. 293 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04714 598 PANTHER RUST RESISTANCE KINASE LR10-RELATED 264 579 IPR045874 GO:0004672
Vivi4g04714 598 FunFam serine/threonine-protein kinase PBS1-like 259 367 - -
Vivi4g04714 598 Pfam Wall-associated receptor kinase galacturonan-binding 32 100 IPR025287 GO:0030247
Vivi4g04714 598 Gene3D Transferase(Phosphotransferase) domain 1 368 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04714 Vivi-Chr4 175957036 175959619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04714 207 584 Receptor kinase-like Gene Family AT1G66910 45.729 1.42e-111 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04714 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04714 - - zju:107414589 664.84