Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04705 ATGACTGTGAGTACTACTCAGCAAGAGAAGTTTGTTAGGTTTCATGATTCTAATTCAGAGAAGTTTTCTGAGAGAATTCATCCTGCACTTAATAAGCCAACACAGTCGAGGAAATTTAGAAGCACATTAAGTTCATTTTCTGAGAAATTTCAAAGGGGATTGGAATCTGGTTCTGAGAGGATGGTGAGGTTCAGAACAAGATTCGACTCTTTTCACCAGAACAGTGCTCTTTCTAGAAACTTTGGCTCTAAATGGAAAATACTTGATCCGCTAGGTTCATTCCTTCAAAAGTGGAACAAAATATTTGTATTGTTATGTGTCATTGCTGTATCACTGGATCCTTTGTTCTTTTATGTTCCTGTGATTGATGGTGAGAAGAAATGCCTTTCACTGGATAAAGGGATGGAGATTACAGCGACTTTTTTGAGAACTTTGTCTGATGCATTTTATATAATCCACATGATTTTCCAATTTCGTACTGGATTTATTGCTCCCTCTTCCCGAGTATTTGGAAGAGGTGTTTTGGTAGAAGATTCTTGGGCAATTGCCAAGAGGTATCTGTCATCATATTTCTTAGTTGACATTCTTGCAATTCTTCCCCTCCCACAGGTGGTGATTCTAGTTATCATCCCGAAGATGAATGGCTTTGAATCTCTCAATACAAAGAACTTGCTGAAATTTGTTGTTTTCTTCCAATATATGCCTCGGCTATTACGAATAATTCCATTATATAAAGAAATTACAAGGACCTCTGGCATACTCACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTTTATATGCTTGCAAGTCATGTCCTTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAGAAACCACATGCTGGCAAGAAGCCTGTCAAAGTAATATCACGTGTAAGAAGGCAGATATGTACTGTAATGACCATGGGGGCGGGTTTAAGACAATTTCAACATTCTTGAATGCTTCTTGCCCAATACTGGAGGAAGATAAAAAGAAATTTGACTTTGGAATTTTCCTTGACGCCCTTCAATCTGGTGTTGTGGAGTCAAGAGATTTTACCCAAAAACTCTTTTACTGTTTTTGGTGGGGCCTAAAAAATTTGAGTTCTCTTGGTCAGAACCTATCAACAAGTACCGATTTTTGGGAAATCTGTTTCGCAGTTTTCATTTCCATAGCTGGTTTGGTTTTGTTTTCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACAACAAGATTGGAGGAGATGAGAGTAAAAAGAAGGGATGCAGAACAATGGATGTCTCATCGATTGCTTCCTGACAGCCTGAGAGAACGAATCAGGAGGTATGATCAATACAAATGGCAAGAAACCAGGGGTGTTGATGAAGACCGTTTAATTCATGATCTTCCCAAAGATTTAAGAAGGGATATTAAGCGTCATCTTTGCTTAGATTTGCTGATGAGGGTGCCGATGTTTGAGAAAATGGATGGACAACTTTTGGACGCAATGTGTGACCGTCTCAAGCCAATACTTTACACAGAACAAAGCTACGTTGTTCGGGAAGGAGACCCCGTCGATGAGATGCTCTTCATAATGCGAGGCAAGCTGTCGACCATAACAACTAACGGCGGTAGAACTGGCTTCTTCAACTCCGAGTTCTTAAAAGCTGGCGACTTCTGTGGAGAGGAGCTTCTCACATGGGCCTTAGATCCTCATTCCTCATCCAACCTTCCCATTTCCACCAGGACGGTCCAAACCATCATAGAAGTCGAAGCCTTTGCCCTAAAAGCTGACGATCTGAAGTTCGTGGCGTCTCAGTTCCGGCGCCTTCACAGCAAGAAGCTGCGCCACACTTTCAGATTCTACTCGCAACAATGGCGTACATGGGCCGCATGTTTTATACAAGCTGCTTGGCGGCGCTACTGTAAGAAGAAGCTTGAAGAGTCTCTTGTTGAAGAGGAGAACAGGCTGCAAGATGCTTTGGCAAAGGCTGGTGGTACCTCAACAAGTCTAGGTGCCACCATGTATGCTTCCAGGTTTGCTGCCAATGCACTCAGATTATTGCGACGAAACCGTACTGCAAGGAAGATAAGGGTGCCAGAGAGAATACCCGCTCTGTTGCTTCAGAAGCCTGAAGAACCTGACTTTACTGAGGAAGAACAATAG 2166 0.4206 MTVSTTQQEKFVRFHDSNSEKFSERIHPALNKPTQSRKFRSTLSSFSEKFQRGLESGSERMVRFRTRFDSFHQNSALSRNFGSKWKILDPLGSFLQKWNKIFVLLCVIAVSLDPLFFYVPVIDGEKKCLSLDKGMEITATFLRTLSDAFYIIHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIAKRYLSSYFLVDILAILPLPQVVILVIIPKMNGFESLNTKNLLKFVVFFQYMPRLLRIIPLYKEITRTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLFSIERETTCWQEACQSNITCKKADMYCNDHGGGFKTISTFLNASCPILEEDKKKFDFGIFLDALQSGVVESRDFTQKLFYCFWWGLKNLSSLGQNLSTSTDFWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRYDQYKWQETRGVDEDRLIHDLPKDLRRDIKRHLCLDLLMRVPMFEKMDGQLLDAMCDRLKPILYTEQSYVVREGDPVDEMLFIMRGKLSTITTNGGRTGFFNSEFLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTIIEVEAFALKADDLKFVASQFRRLHSKKLRHTFRFYSQQWRTWAACFIQAAWRRYCKKKLEESLVEEENRLQDALAKAGGTSTSLGATMYASRFAANALRLLRRNRTARKIRVPERIPALLLQKPEEPDFTEEEQ 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04705 721 Pfam Ion transport protein 98 418 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi4g04705 721 CDD CAP_ED 491 622 IPR000595 -
Vivi4g04705 721 ProSiteProfiles cAMP/cGMP binding motif profile. 491 575 IPR000595 -
Vivi4g04705 721 Gene3D - 88 415 - -
Vivi4g04705 721 Pfam Cyclic nucleotide-binding domain 512 601 IPR000595 -
Vivi4g04705 721 SUPERFAMILY cAMP-binding domain-like 420 613 IPR018490 -
Vivi4g04705 721 Coils Coil 643 663 - -
Vivi4g04705 721 FunFam Cyclic nucleotide-gated ion channel 1 418 482 - -
Vivi4g04705 721 Gene3D Helix hairpin bin 417 482 - -
Vivi4g04705 721 Gene3D Jelly Rolls 489 609 IPR014710 -
Vivi4g04705 721 SUPERFAMILY Voltage-gated potassium channels 89 413 - -
Vivi4g04705 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 73 716 - -
Vivi4g04705 721 SMART cnmp_10 491 622 IPR000595 -
Vivi4g04705 721 FunFam Cyclic nucleotide-gated ion channel 1 489 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04705 Vivi-Chr4 175883660 175889652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04705 7 720 Ion Channels AT5G53130 74.860 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04705 K05391 - gmx:100801032 1188.33