Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04692 ATGAACATATGGAAATTCTTCCTCTGTTATTCTGCGGAAACAATATCACTTTTTTTAAGCTTTTTCAAAATTGTTATGATAGTAGTGCTGCTGCATCATGATAATCAAACATGTGATGCAATTACTAATAGCCAAACATATTGTACCCCTTCTTCATGCGGCGAAATCACCAACATCAAGTATCCGTTTCGACTTAAAGATGACCCAGTCACCTGTGGTAATCCGAGGTATGAGTTGTCATGTGAAAACAACATGACAGTGTTGGCTCTGTTTTCGGGTAAATACTATGTGCAGGAAATCAACTACGTACGCTACACAATTCGGTTAGTTGATTCTGGAATCCAAGAGACTGATTGCTCATCCATTCCTAAGTATTCCTTAGCGGCGTCAAATTTCTCAGTTCCTCTCATGAATAATTATAACGACTACGTGGATCCATATGAAATGGATTATGGTTCTGGGCACATAATATACTTGAACTGTAGTAAACCAGTGAAGGATGATCCTGAGTATGTTGATATAGGTCACTGCATCAACAGGGACTCCAAAAGCTATCTTTATGCTTTTGCTGCGGCGGCTCCGTACTATTCGGATGGTCTTGTTTTTAGCGACTTTTCGGTTGGGAGATTAAAAGATTACTGTAACGTGAAGGTTGTTGGTATGATATCAATATCAGCGTTTCATAGTAACAGAGTCAGAGATGATGTACCAAATGGATCCCTTTCAAACGAGCAAATTCATGGAATGCTACTCTATGGCTTTCAGCTATCGTGGATAGCTAGTCCTTGTAGAGATACTTGCGACGATGACCAAATCTGCAACTTCAATGGAACCACCAGAAATATTGAATGTTCCTACCTAGGCGACATGCCTGGTTATTGCAAATATCCATTGGAGAAACATGTCCACAAAACATGCGACCAACTGTGGAAGCCGCGCAGATATGTTGAAGATCTAGCAATTGGCATTGTTAAAGGAATAGCCCAAATATTTAGGATAACAGCCACTCAAACAATAGAGAAAGGGTCAGACTCTCTAATTGCTATCGAGATAGGAAGAGTGACCGGAAGATATATTTTACCATATTTTGTTCCGAGATTTATACTGGGTCTTTTGATTTTCTTTATGCTATTGATATATATGTATGGGAGAAGACATATATCAATTTATGCAAATATTGAAGGTTTTCTTCAAAGAAGTACCTTAATGCCAATTAGGTATTCACACAAAGAAATAAAGAATATGACAAGATGTTTCAAAAACAAGCTGGGTGAAGGAGGATTTGGAGCTGTTTATAAAGGAAAGCTTCGTAGTGGATCATTTGTAGCCATAAAGATGTTGGGAAAATCAAAGGGTAATGGACAAGATTTTATCAATGAAGTCGCAACTATAGGGAGAATACATCACGCCAACGTGGTTCGACTTATTGGATTTTGTGTGGAAAGATCAAAACGAGCTCTTGTTTATGAATTCATGCCCAATGGTTCTCTTGATAAATACATTTCTTCTAGAGAGAATGTTATTACTCTAACTTATAAACAAATGTTTGACATATCTCTTGGAGTGGCTCGTGGAATTGCTTATTTACATCAAGGATGTGACATGCAAATTTTACATTTTGATATCAAGCCACATAACATACTTCTAGACGAGAACTTTATCCCCAAAGTTTCAGACTTTGGTCTTGCGAAGCTTTATCCTAATAACATTAGCATTGTCACTTTGACTGCAGCAAGAGGTACAATTGGTTATATGGCTCCTGAATTATTTTATCAAAATATAGGAGGAGTTTCCTATAAGGCTGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGACAAGTAAGAGAAGAAATTTAAATCCACATGCGGATCGTTCAAGCCAACTTTTCTTTCCGTTTTGGATCTACAATCAATTGGTTGAAGAAAAGGACATAGAAATGGATGAAATTTCAGATGAAGAAATGATTAATGTGAAAAAGATGTTCATAACCGCGTTGTGGTGTATACAATTAAAACCAAATGATCGTCCTCCGATGGACAAAGTAATAGAGATGCTAGAAGGGAATATTGATGACATCGGAATTCCTCCAAAACCTTCTCTATATCCAAATGAAATTATTCAGGAAGATCTCGATGTAACCTCTGAGGAATTTGAGTCAGATGCTGTTACTGATTGA 2181 0.3723 MNIWKFFLCYSAETISLFLSFFKIVMIVVLLHHDNQTCDAITNSQTYCTPSSCGEITNIKYPFRLKDDPVTCGNPRYELSCENNMTVLALFSGKYYVQEINYVRYTIRLVDSGIQETDCSSIPKYSLAASNFSVPLMNNYNDYVDPYEMDYGSGHIIYLNCSKPVKDDPEYVDIGHCINRDSKSYLYAFAAAAPYYSDGLVFSDFSVGRLKDYCNVKVVGMISISAFHSNRVRDDVPNGSLSNEQIHGMLLYGFQLSWIASPCRDTCDDDQICNFNGTTRNIECSYLGDMPGYCKYPLEKHVHKTCDQLWKPRRYVEDLAIGIVKGIAQIFRITATQTIEKGSDSLIAIEIGRVTGRYILPYFVPRFILGLLIFFMLLIYMYGRRHISIYANIEGFLQRSTLMPIRYSHKEIKNMTRCFKNKLGEGGFGAVYKGKLRSGSFVAIKMLGKSKGNGQDFINEVATIGRIHHANVVRLIGFCVERSKRALVYEFMPNGSLDKYISSRENVITLTYKQMFDISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPNNISIVTLTAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMEMTSKRRNLNPHADRSSQLFFPFWIYNQLVEEKDIEMDEISDEEMINVKKMFITALWCIQLKPNDRPPMDKVIEMLEGNIDDIGIPPKPSLYPNEIIQEDLDVTSEEFESDAVTD 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04692 726 ProSiteProfiles Protein kinase domain profile. 417 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04692 726 Gene3D Transferase(Phosphotransferase) domain 1 492 694 - -
Vivi4g04692 726 PANTHER RUST RESISTANCE KINASE LR10-RELATED 390 706 IPR045874 GO:0004672
Vivi4g04692 726 Gene3D Phosphorylase Kinase; domain 1 397 491 - -
Vivi4g04692 726 FunFam PR5-like receptor kinase 492 698 - -
Vivi4g04692 726 Pfam Protein kinase domain 420 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04692 726 FunFam serine/threonine-protein kinase PBS1-like 390 491 - -
Vivi4g04692 726 SUPERFAMILY Protein kinase-like (PK-like) 403 688 IPR011009 -
Vivi4g04692 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Vivi4g04692 726 SMART serkin_6 417 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04692 726 ProSitePatterns Protein kinases ATP-binding region signature. 423 445 IPR017441 GO:0005524
Vivi4g04692 726 Pfam Wall-associated receptor kinase galacturonan-binding 48 111 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04692 Vivi-Chr4 175582220 175603009 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04692 40 718 Receptor kinase-like Gene Family AT5G38260 35.405 1.26e-113 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04692 Pkinase 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04692 - - tpra:123893228 881.322