Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04691 ATGGTGAAAGGAATATTACAAATAATTGGGGCAACAAGAAGCTCTCGGTTATCTCAAAAAGATCGTGATTATAAAAATTTTATTGAATTGGGAAAAATCACTAGCAGATATCTCGTTCCATCAATATTTCTGGTAAGATTAACATTAGGAATCATGGTTTTCTCAGTGCTATTGATATATACATGTCGAAGAAGACATATATCAATATATGAAAATATTGAGGTTTTTCTTCGAGGGAATACTTTGATGCCAATAAGATATTCATACAAAGATATAAAGAAAATGACTCAAAGATTCAAGGATAAACTAGGCGAAGGAGGCTTTGGTCTTGTTTATAAAGGAAAGTTAATTAGTGGGTCATTTGCGGCCATAAAAATGTTGGATAAACCTAAGGGTAATGGACAGGATTTCATTAGTGAAGTCACAACCATAGGAAGAATACACCATGCCAATGTGGTGAGACTTATTGGTTTTTGTGCTGAGAGATCAAAACGTGCTCTGGTTTATGAATTCATGCCGAACGGTTCTCTTGATAAATATATTTCTACTAAAGATGATGCTTTCTCTTTAAGTTCAAATAAAATGTATGAAATCTCTCTAGGCGTTGCTCGGGGAATTGCTTATTTGCATCAAGGTTGTGACATGCAAATCTTGCATTTTGATATCAAACCTCATAATATCCTTCTTGATGAGAACTTTATTCCCAAGATTTCGGATTTTGGTCTTGCAAAACTTTATCCTAATGATAATAGTATTGTAACTATAACTGCAGCAAGAGGAACAATTGGTTACATGGCTCCTGAATTATTTTATAAAAACATTGGAGGGGTGTCTTACAAGGCTGATGTGTATAACTTCGGAATGCTTTTGATGGAAATGGCAAGTAAGAGAAGAAATTTAAATCCACATGCGGATCATTCAAGCCAACTTTTCTTTCCCTATTGGATTTATAATCAGTTGATTGAAGAAAGAGAGATAGAAATGGATGAAATGACTAATGAGGGAAAAAATAATGTAAAAAAAATGTTCATAACGGCATTATGGTGTATACAGTTAAAACCAAGTGATCGTCCTGCAATGAATAAAGTGATAGAGATGCTTGAAGGAAATATTGAGAATATTGAAATGCCTCCAAAACCTTCTTTTTATCCAAATGAAATGATTATGGAAGACCCAGATGTGAAGTCTAATGAAATTGAATCTGAAACAAACGTTGATTCTGTTAGTTTTATTGAGGAAGATCCAACACAATAA 1254 0.3341 MVKGILQIIGATRSSRLSQKDRDYKNFIELGKITSRYLVPSIFLVRLTLGIMVFSVLLIYTCRRRHISIYENIEVFLRGNTLMPIRYSYKDIKKMTQRFKDKLGEGGFGLVYKGKLISGSFAAIKMLDKPKGNGQDFISEVTTIGRIHHANVVRLIGFCAERSKRALVYEFMPNGSLDKYISTKDDAFSLSSNKMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFIPKISDFGLAKLYPNDNSIVTITAARGTIGYMAPELFYKNIGGVSYKADVYNFGMLLMEMASKRRNLNPHADHSSQLFFPYWIYNQLIEEREIEMDEMTNEGKNNVKKMFITALWCIQLKPSDRPAMNKVIEMLEGNIENIEMPPKPSFYPNEMIMEDPDVKSNEIESETNVDSVSFIEEDPTQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04691 417 ProSitePatterns Protein kinases ATP-binding region signature. 103 125 IPR017441 GO:0005524
Vivi4g04691 417 FunFam PR5-like receptor kinase 172 379 - -
Vivi4g04691 417 Pfam Protein kinase domain 100 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04691 417 SUPERFAMILY Protein kinase-like (PK-like) 82 368 IPR011009 -
Vivi4g04691 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Vivi4g04691 417 Gene3D Phosphorylase Kinase; domain 1 77 171 - -
Vivi4g04691 417 ProSiteProfiles Protein kinase domain profile. 97 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04691 417 SMART serkin_6 97 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04691 417 Gene3D Transferase(Phosphotransferase) domain 1 172 377 - -
Vivi4g04691 417 PANTHER RUST RESISTANCE KINASE LR10-RELATED 70 388 IPR045874 GO:0004672
Vivi4g04691 417 FunFam serine/threonine-protein kinase PBS1-like 71 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04691 Vivi-Chr4 175513287 175515885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04691 86 393 Receptor kinase-like Gene Family AT5G38280 50.314 1.85e-105 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04691 Pkinase 6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04691 - - tpra:123893228 661.373