Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04686 ATGGAAACTCAAAATCTCACAATAGATGATACCACCTCATTATTATCTGATATTTTCAATGAAACACAGTTTGCAGGAGAAGATCTCTTTTCCATTTTAGAAAACCTAGAAAACTTCAATCATTTTCCCATCATTACCAATCACCAAAACTCAAAAACTTCTTTTACTACTCCACAAGATTCTGAAACTGAGCCTGCTGAAACATCACAGAAAACCAAGAGACAGAAGATTGCTCCGAGTTCAGTTATCGAGGAACCAAACAGCGATGGACAACATCGAATGTCGCATATCACTGTCGAACGAAATCGGAGAAAGCAAATGAATGAGCAGTTATCCATCTTGAAGTCACTCATGCCTTGCTTTTATGTCAAACGCGGAGACCAAGCATCAATAGTTGAAGGTGTAATCGATTACATCAACGAGTTACATCAACTACTCCAATGCCTAGAATCCAAGAAACAAAGAAAAGTTTACAATGAAGTACTAAGTCCAAGACTATTAGTTTCAAGTCCAAGGCCTTCACCACTAATAAGTCCTAGACTAGTCTTACCAATTAGTCCAACAACTCCACATTCACAACAATGGTTGCAATCAATTGGTAATCATCTTTCATCCGAACCTTCTCCTACTTCTTCGGTTTCTTCCATCAACGACAATATCAACGAGCTTGTCGCGAATTCAACTTCATCTGTTGCTGATGTTGAGGTTAAGTTCTGTGGCTCACATTTGCTTTTGAAAACTGTTTCATCCCGAATTCCGGGGCAGGTTTTCAGAATAATGTCTGTCCTTGAAGATCTAGCACTTGAAATTGTTCATGTTAGTGTTAGTACCGCTGATGAAACCATGTTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTGAGTGCTGAGGAACTAGCTCAACATATCCAACAGACATTTTGTTAA 933 0.3837 METQNLTIDDTTSLLSDIFNETQFAGEDLFSILENLENFNHFPIITNHQNSKTSFTTPQDSETEPAETSQKTKRQKIAPSSVIEEPNSDGQHRMSHITVERNRRKQMNEQLSILKSLMPCFYVKRGDQASIVEGVIDYINELHQLLQCLESKKQRKVYNEVLSPRLLVSSPRPSPLISPRLVLPISPTTPHSQQWLQSIGNHLSSEPSPTSSVSSINDNINELVANSTSSVADVEVKFCGSHLLLKTVSSRIPGQVFRIMSVLEDLALEIVHVSVSTADETMLNSFTIKIGIECQLSAEELAQHIQQTFC 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04686 310 PANTHER TRANSCRIPTION FACTOR FAMA 16 309 IPR044283 GO:0003700|GO:0010052
Vivi4g04686 310 Pfam Helix-loop-helix DNA-binding domain 93 142 IPR011598 GO:0046983
Vivi4g04686 310 MobiDBLite consensus disorder prediction 49 65 - -
Vivi4g04686 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Vivi4g04686 310 SMART finulus 97 148 IPR011598 GO:0046983
Vivi4g04686 310 MobiDBLite consensus disorder prediction 72 88 - -
Vivi4g04686 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 159 IPR036638 GO:0046983
Vivi4g04686 310 Gene3D - 84 157 IPR036638 GO:0046983
Vivi4g04686 310 MobiDBLite consensus disorder prediction 49 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04686 Vivi-Chr4 175267180 175268722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04686 19 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 44.248 1.14e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi4g04686 HLH 5.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04686 K20558 - gmx:100777437 317.775