Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04684 ATGAATCAACAACAACAACATAGTATGAATATCCTATGTAAAACCACAGTACACGAAAGTGTTACTAAGAAATACATAAAACCGAAGAGAAACATCAATGCAAGAAACAACACCAACAACAAAAACTCTATTCAAACCGAATTACCGAAAGTGATTCGCGTAATAGCAACTGATCCAGATGCTACTGATACTGATTCATCCAGTGATGAATCAGTATCACAGTTTTCCAACCCTCGGAGAATCAGAATCAAACAGTATGTCAACAAAATTGAAATCGAAACCGTCGCTTCGACGGTTTCGGCCTCGACAGTTTCCCGAAACAAGAAAAGATCAGAACTTAAGTCTTCCCGGAGACCGGCGAAGGTACAAGCCATCACTGGAGACGAGAGAAAATTCCGAGGTGTACGGATGAGGCCGTGGGGAAAATGGGCTGCGGAGATTCGAGATCCTGCCAGCCGTGTACGATTGTGGCTGGGAACTTTCAGCACCGCAGAAGAAGCTGCTAAGGTTTACGATGCTGCAGCTATTAAGTTTCGTGGTAAGGACGCTGTCACCAACTTTTCAATGGTTGAGGAGAATGTTGAAAAAGATGAAGTTGTTAACAGAACGACGACAATGAAGGTTGAAGAAATCAAAACCGAAATTTCCGTTTCCGGCGAAGATTCCGGCGATGAGTTTGTTAATCTTTCTTCTCCAACTTCTGTTCTCCGGTTCAGACATGATGAGATTCATGAATCAAATAAACCGGTTGAACCAGTTATTGAAGATGAACCGGTCGAACCAAACGAACCGGTTGGTGAATGTGAACCGAGTTTTTTTGACGAAACTAATGAGATATTCCGACAGGAAATGGAGGACGTGTTTAATTTTCCAACAACTTCTGATTACTATTACTCAAACATGTTTGAAGAAGCTCCTATGCAATTTGTTCATGAAACGACACCGGTTCTGTTTAATGAGTGTCGTTTCAGTGATCACGTGGAAATTAATAAAACGCACTCACCATCATCACCATCATCATCAGCTTTATGTGAAGGGGATGATTTTCTGGATGACATTTTGTTAGGTTTAGAGCCTCTCATTGCGCTTTGA 1092 0.4167 MNQQQQHSMNILCKTTVHESVTKKYIKPKRNINARNNTNNKNSIQTELPKVIRVIATDPDATDTDSSSDESVSQFSNPRRIRIKQYVNKIEIETVASTVSASTVSRNKKRSELKSSRRPAKVQAITGDERKFRGVRMRPWGKWAAEIRDPASRVRLWLGTFSTAEEAAKVYDAAAIKFRGKDAVTNFSMVEENVEKDEVVNRTTTMKVEEIKTEISVSGEDSGDEFVNLSSPTSVLRFRHDEIHESNKPVEPVIEDEPVEPNEPVGECEPSFFDETNEIFRQEMEDVFNFPTTSDYYYSNMFEEAPMQFVHETTPVLFNECRFSDHVEINKTHSPSSPSSSALCEGDDFLDDILLGLEPLIAL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04684 363 MobiDBLite consensus disorder prediction 101 122 - -
Vivi4g04684 363 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 48 268 - -
Vivi4g04684 363 CDD AP2 131 187 IPR001471 GO:0003700|GO:0006355
Vivi4g04684 363 SUPERFAMILY DNA-binding domain 131 188 IPR016177 GO:0003677
Vivi4g04684 363 SMART rav1_2 131 194 IPR001471 GO:0003700|GO:0006355
Vivi4g04684 363 FunFam Ethylene-responsive transcription factor 2 130 189 - -
Vivi4g04684 363 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Vivi4g04684 363 PRINTS Ethylene responsive element binding protein signature 154 170 IPR001471 GO:0003700|GO:0006355
Vivi4g04684 363 Gene3D AP2/ERF domain 130 190 IPR036955 GO:0003700|GO:0006355
Vivi4g04684 363 ProSiteProfiles AP2/ERF domain profile. 131 188 IPR001471 GO:0003700|GO:0006355
Vivi4g04684 363 Pfam AP2 domain 131 180 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04684 Vivi-Chr4 175205772 175207552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04684 13 355 AP2-EREBP Transcription Factor Family AT4G27950 35.393 2.52e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi4g04684 AP2 5.4e-11 CL0081