LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g04684	ATGAATCAACAACAACAACATAGTATGAATATCCTATGTAAAACCACAGTACACGAAAGTGTTACTAAGAAATACATAAAACCGAAGAGAAACATCAATGCAAGAAACAACACCAACAACAAAAACTCTATTCAAACCGAATTACCGAAAGTGATTCGCGTAATAGCAACTGATCCAGATGCTACTGATACTGATTCATCCAGTGATGAATCAGTATCACAGTTTTCCAACCCTCGGAGAATCAGAATCAAACAGTATGTCAACAAAATTGAAATCGAAACCGTCGCTTCGACGGTTTCGGCCTCGACAGTTTCCCGAAACAAGAAAAGATCAGAACTTAAGTCTTCCCGGAGACCGGCGAAGGTACAAGCCATCACTGGAGACGAGAGAAAATTCCGAGGTGTACGGATGAGGCCGTGGGGAAAATGGGCTGCGGAGATTCGAGATCCTGCCAGCCGTGTACGATTGTGGCTGGGAACTTTCAGCACCGCAGAAGAAGCTGCTAAGGTTTACGATGCTGCAGCTATTAAGTTTCGTGGTAAGGACGCTGTCACCAACTTTTCAATGGTTGAGGAGAATGTTGAAAAAGATGAAGTTGTTAACAGAACGACGACAATGAAGGTTGAAGAAATCAAAACCGAAATTTCCGTTTCCGGCGAAGATTCCGGCGATGAGTTTGTTAATCTTTCTTCTCCAACTTCTGTTCTCCGGTTCAGACATGATGAGATTCATGAATCAAATAAACCGGTTGAACCAGTTATTGAAGATGAACCGGTCGAACCAAACGAACCGGTTGGTGAATGTGAACCGAGTTTTTTTGACGAAACTAATGAGATATTCCGACAGGAAATGGAGGACGTGTTTAATTTTCCAACAACTTCTGATTACTATTACTCAAACATGTTTGAAGAAGCTCCTATGCAATTTGTTCATGAAACGACACCGGTTCTGTTTAATGAGTGTCGTTTCAGTGATCACGTGGAAATTAATAAAACGCACTCACCATCATCACCATCATCATCAGCTTTATGTGAAGGGGATGATTTTCTGGATGACATTTTGTTAGGTTTAGAGCCTCTCATTGCGCTTTGA	1092	0.4167	MNQQQQHSMNILCKTTVHESVTKKYIKPKRNINARNNTNNKNSIQTELPKVIRVIATDPDATDTDSSSDESVSQFSNPRRIRIKQYVNKIEIETVASTVSASTVSRNKKRSELKSSRRPAKVQAITGDERKFRGVRMRPWGKWAAEIRDPASRVRLWLGTFSTAEEAAKVYDAAAIKFRGKDAVTNFSMVEENVEKDEVVNRTTTMKVEEIKTEISVSGEDSGDEFVNLSSPTSVLRFRHDEIHESNKPVEPVIEDEPVEPNEPVGECEPSFFDETNEIFRQEMEDVFNFPTTSDYYYSNMFEEAPMQFVHETTPVLFNECRFSDHVEINKTHSPSSPSSSALCEGDDFLDDILLGLEPLIAL	363

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi4g04684	363	MobiDBLite	consensus disorder prediction	101	122	-	-
Vivi4g04684	363	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	48	268	-	-
Vivi4g04684	363	CDD	AP2	131	187	IPR001471	GO:0003700\|GO:0006355
Vivi4g04684	363	SUPERFAMILY	DNA-binding domain	131	188	IPR016177	GO:0003677
Vivi4g04684	363	SMART	rav1_2	131	194	IPR001471	GO:0003700\|GO:0006355
Vivi4g04684	363	FunFam	Ethylene-responsive transcription factor 2	130	189	-	-
Vivi4g04684	363	PRINTS	Ethylene responsive element binding protein signature	132	143	IPR001471	GO:0003700\|GO:0006355
Vivi4g04684	363	PRINTS	Ethylene responsive element binding protein signature	154	170	IPR001471	GO:0003700\|GO:0006355
Vivi4g04684	363	Gene3D	AP2/ERF domain	130	190	IPR036955	GO:0003700\|GO:0006355
Vivi4g04684	363	ProSiteProfiles	AP2/ERF domain profile.	131	188	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g04684	Vivi-Chr4	175205772	175207552	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g04684	13	355	AP2-EREBP Transcription Factor Family	AT4G27950	35.393	2.52e-45	156

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vivi4g04684		AP2	5.4e-11	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g04684	-		-	psat:127091686	510.76

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