Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04677 ATGTTGTTTATTGGTATTGGAGCTGAACCAGTAGCTGATAAACAAGCTTTACTGGATTTCCTTCACAACATGAATCACTCTGCACATATCAATTGGAGCAAGAGTTCTTCTATATGCAAAAAATGGACTAGAGTTACCTGCAATACCGAAAAATCAAGAGTTATATCGCTTCAGCTACAAAGTGTTGGACTGAATGGTTCAATTCCATCTAACACTCTTAGTAGACTCACAGCACTTCAAAATTTGAATCTTGCTTCGAATAGTATAACTGGTTTCTTCCCTTCTGATTTCTATAAGCTGAGAAATTTGACCTCTCTTTTCCTCCAATTCAACAAGTTTTCTGGGCCATTGCCATTAGATTTTTCAGTTTGGAATAATCTAACTGTTGTTGATTTTTCCAATAATGGTTTTAATGGAAGCATTCCTTTATCAGTTTCGAAGTTGACTCATCTCACTTCTTTGATTCTAGCTAATAACACTCTTTCAGGTGAAATTCCTGATATCAATATTCCTAGCCTGAAAGATCTCAATTTGGAAAACAATAATCTTAGTGGTGTTGTGCCTAAAACACTTCATAGATTTCCAAAATTGTCCTTCTCAGGTAACAATCTTACATTTGTAGATGTTTATCCTCCAAATTCTCATAAGAAAAGGAAAAAAACCAAAGGGCTTAAAGAACAAGCGTTATTAGGCATCATCATTGGTGGTTGTGTGCTAGGAATTTTAACCATAGCAGTTTTCTGGATTGTGTGCTGTTACAAGAAACACGGCGAAGCGGGACAACTTGTTAAGTCTCAGAAGAACAAAGAAGTTTTTTCTGATAAAAAAGAATCTTCTGAGAGTCTAGAACGAAACAAAATTGTTTTCTTTGAAGATTGCAATTATGTATTTGACTTGGAAGATTTGTTGAGAGCTTCTGCTGAGGTGCTTGGAAAGGGAACTTTTGGTACTGTCTATAAGGCTGCTTTAGAGGAGGCGACGACAGTTGCGGTTAAGCGGCTGAAGGAGGTTACGGTTGGGAAGCGGGAGTTTGAACAGCAGATGGAGATGGTTGGAGCAATTAGGCATGAGAATGTGGCTGCTCTAAGGGCTTATTACTATTCAAAGGAGGAGAAACTTATGGTTTATGATTTTTATGAACAAGGCAGTGTCTCCGCAATGTTGCATGGCAAAAGAGGGGCAGATAGAATTCCTTTAGACTGGGAAACCAGGTTGAGAATAGCAATTGGTGTAGCAAGAGGCATTGCACACATCCATGCACAAGAAGAAGGAAAACTAGTCCATGGAAACATAAAAGCCTCAAACATTTTCCTCAACTCTAAAGGGTATGGTTCCATCTCTGACATTGGTCTAGCAACCATGATAATAAGTCCAACATCTCCAAGAGCAACAGGATACCTTGCACCTGAAGTAACTGAAACTCGAAAAGCAACTCCGGCGGCTGACGTCTATAGTTTCGGTGTCTTGTTACTTGAACTTTTAACTGGAAAATCTCCTTTACATGTAGGTGAGGAAGTTGTTCATTTGGTTAGGTGGGTGAATTCTGTGGTTAGAGAAGAGTGGACTTCTGAAGTGTTTGATTTGGAGTTATTGAGGTATCCTAATATAGAGGAAGAAATGGTTGAGATGTTGCAAATTGGTATGGCTTGTGTTGTGAGGATGCAAGATCAAAGACCAAAAATGGATGAAGTTTTGAGAATGGTTGAAGACATTCATAGGGGTACTAGTGGAAATAGACTTTCCACTGAATCTAGATCAGATGGTTCTACTCCAATAACTCCTCATGTAATAGAAACACCTATTTCTCTTCCACATTGA 1818 0.3856 MLFIGIGAEPVADKQALLDFLHNMNHSAHINWSKSSSICKKWTRVTCNTEKSRVISLQLQSVGLNGSIPSNTLSRLTALQNLNLASNSITGFFPSDFYKLRNLTSLFLQFNKFSGPLPLDFSVWNNLTVVDFSNNGFNGSIPLSVSKLTHLTSLILANNTLSGEIPDINIPSLKDLNLENNNLSGVVPKTLHRFPKLSFSGNNLTFVDVYPPNSHKKRKKTKGLKEQALLGIIIGGCVLGILTIAVFWIVCCYKKHGEAGQLVKSQKNKEVFSDKKESSESLERNKIVFFEDCNYVFDLEDLLRASAEVLGKGTFGTVYKAALEEATTVAVKRLKEVTVGKREFEQQMEMVGAIRHENVAALRAYYYSKEEKLMVYDFYEQGSVSAMLHGKRGADRIPLDWETRLRIAIGVARGIAHIHAQEEGKLVHGNIKASNIFLNSKGYGSISDIGLATMIISPTSPRATGYLAPEVTETRKATPAADVYSFGVLLLELLTGKSPLHVGEEVVHLVRWVNSVVREEWTSEVFDLELLRYPNIEEEMVEMLQIGMACVVRMQDQRPKMDEVLRMVEDIHRGTSGNRLSTESRSDGSTPITPHVIETPISLPH 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04677 605 ProSitePatterns Protein kinases ATP-binding region signature. 310 341 IPR017441 GO:0005524
Vivi4g04677 605 Gene3D Transferase(Phosphotransferase) domain 1 379 587 - -
Vivi4g04677 605 SUPERFAMILY L domain-like 27 207 - -
Vivi4g04677 605 MobiDBLite consensus disorder prediction 575 596 - -
Vivi4g04677 605 Pfam Protein tyrosine and serine/threonine kinase 308 566 IPR001245 GO:0004672|GO:0006468
Vivi4g04677 605 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 379 582 - -
Vivi4g04677 605 FunFam pollen receptor-like kinase 1 272 378 - -
Vivi4g04677 605 SUPERFAMILY Protein kinase-like (PK-like) 308 568 IPR011009 -
Vivi4g04677 605 Gene3D Ribonuclease Inhibitor 12 119 IPR032675 -
Vivi4g04677 605 PANTHER OS05G0588300 PROTEIN 12 579 - -
Vivi4g04677 605 ProSiteProfiles Protein kinase domain profile. 304 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04677 605 FunFam Probable inactive receptor kinase RLK902 10 169 - -
Vivi4g04677 605 Pfam Leucine rich repeat 57 113 IPR001611 GO:0005515
Vivi4g04677 605 Gene3D Ribonuclease Inhibitor 120 226 IPR032675 -
Vivi4g04677 605 Gene3D Phosphorylase Kinase; domain 1 268 378 - -
Vivi4g04677 605 MobiDBLite consensus disorder prediction 575 605 - -
Vivi4g04677 605 Pfam Leucine rich repeat N-terminal domain 12 48 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04677 Vivi-Chr4 175107599 175111245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04677 2 582 Receptor kinase-like Gene Family AT4G23740 55.887 0.0 658
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi4g04677 PK_Tyr_Ser-Thr 8.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04677 - - gmx:100810095 845.884