Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04673 ATGGAGCATGGAAGTCACTCCCGTTCGACACATTCAAACTTTGGTAATGAAACCACAAACATTGAAAACGCCAACAACAATATCAACGACAATATTGAGAACCAACATTTACAAGAAACAGGGGATGAGGAAATTCATATGCCCATCAAGAATGTGACAAAAATCATGCAGCAGGCTATTCCCCCAGATGGAATAATCTCTAAGGATGCCAAGGAGTCAACTCAATTGTGTGTGACTGAATTTATGAACATCGTCACAAATGAGGCTAATGAGCGATGTAAGGCAGAGAGTCGAAAGATCATTAGGGGTGAAGATTTAATATGGGCTATGGATAAGTTGGGCTTTGAGGACTATGTTGGTCCTCTTCTTTTATTCCATAAAAAATATCTCAACCATGAAGCTCAATTGAGTAACATGCCATTTGAGCATGAGTTCAAGAAGGACGGATCAGGCGCTAGTGGCTCAAACATTGGTGGTGATATTGGCAAAATTTGA 495 0.402 MEHGSHSRSTHSNFGNETTNIENANNNINDNIENQHLQETGDEEIHMPIKNVTKIMQQAIPPDGIISKDAKESTQLCVTEFMNIVTNEANERCKAESRKIIRGEDLIWAMDKLGFEDYVGPLLLFHKKYLNHEAQLSNMPFEHEFKKDGSGASGSNIGGDIGKI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04673 164 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 46 110 IPR003958 -
Vivi4g04673 164 SUPERFAMILY Histone-fold 43 133 IPR009072 GO:0046982
Vivi4g04673 164 MobiDBLite consensus disorder prediction 1 27 - -
Vivi4g04673 164 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 22 134 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi4g04673 164 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Vivi4g04673 164 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
Vivi4g04673 164 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Vivi4g04673 164 MobiDBLite consensus disorder prediction 8 27 - -
Vivi4g04673 164 Gene3D Histone, subunit A 33 153 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04673 Vivi-Chr4 175033109 175034576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04673 40 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 48.958 5.52e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi4g04673 CBFD_NFYB_HMF 6.7e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04673 K08065 - qsa:O6P43_020714 121.709