Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04672 ATGGAGCATGGAAGCCACTCCTTTGGCCATGGTCGCTCGACACAATCAAGCTCAGATAATGAAACCACAAACATTGAAAACGCCAACAACAACATCAACAACAACATTGGTACTGGAATAGAGAATCAACAGTTACAAGGAACAATTGACGAGGAAACACATATGCCCATCAAGAATGTGACAAGAATCATGCAGCGAGCTATTCCCCCAAATAGAAGAATATCTAAGGGTGCCAAGGAGTCAATTCAATTGTGTGTGACTGAATTTATGAACATCGTTACGAGTGAGGCTAATGAGAGATGTAAGGCAGAGAGCCGACAAATCATTAGCGGTGAAGATTTAATATGGGCCATGGATAGGTTGGGCTTTGAGGACTATGTTGGCCCTCTTCTTTTATACCATCAAAAATATCTCAACCACGAGGCTCAACTTGATAGCATGAGGCTCTACAAGGATATGTCAGGTGCTAGTGGCTCAAACATTGGTGGTGCTAATGGCCAAAATTGA 507 0.426 MEHGSHSFGHGRSTQSSSDNETTNIENANNNINNNIGTGIENQQLQGTIDEETHMPIKNVTRIMQRAIPPNRRISKGAKESIQLCVTEFMNIVTSEANERCKAESRQIISGEDLIWAMDRLGFEDYVGPLLLYHQKYLNHEAQLDSMRLYKDMSGASGSNIGGANGQN 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04672 168 PRINTS CCAAT-binding transcription factor subunit A signature 120 138 - -
Vivi4g04672 168 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Vivi4g04672 168 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Vivi4g04672 168 MobiDBLite consensus disorder prediction 1 38 - -
Vivi4g04672 168 Gene3D Histone, subunit A 42 158 IPR009072 GO:0046982
Vivi4g04672 168 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 54 118 IPR003958 -
Vivi4g04672 168 MobiDBLite consensus disorder prediction 8 38 - -
Vivi4g04672 168 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 26 142 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi4g04672 168 SUPERFAMILY Histone-fold 51 142 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04672 Vivi-Chr4 175006836 175008067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04672 48 143 CCAAT-HAP3 Transcription Factor Family AT4G14540 51.042 9.89e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi4g04672 CBFD_NFYB_HMF 2.1e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04672 K08065 - cpap:110808737 116.316