Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04667 ATGAATCAACAACAACAACATAGTATGAATATCCTATGTAAAACCACGGTACACGAAAGTGTTACTAAGAAATACATAAAACCCAAGAGAAACATCCATGCAAGAAACAACAACAACATCAAAAACTCTATTCAAACCGAATTACCGAAAGTGATTCGCGTAATAGCAACTGATCCAGATGCTACTGATACTGATTCATCCAGTGATGAATCAGTATCACAGTTTTCCAACCCTCGGAGAATCAGAATCAAACAGTATGTCAACAAAATCGAAATCGAAACCGTCGCTTCGACGGTTTCGGCCTCGACAGTTTCCCGAAACAAGAAAAGATCATCCAGAGAACTTAAGTCTTCTCGCAGACCGGCCAAGGTACAAGCCATCACTGGAGACGAGAGAAAATTCCGAGGCGTACGGATGAGGCCGTGGGGAAAATGGGCTGCTGAGATTCGAGATCCTGCCAGCCGTGTACGGTTGTGGCTGGGAACTTTCAGCACCGCAGAAGAAGCTGCTAAGGTTTACGATGCTGCAGCTATTAAGTTTCGTGGTAAGGACGCTGTCACCAACTTTTCAATGGTTGAGGAGAATGTTGAAAAAGATGAAGTTGTTAACAGAACTACGACAATGAAGGTTGAAGAAATCAAAACCGAAATTTCCGTTTCCGGCGAAGATTCCGGCGATGAGTTTGTTAATCTTTCTTCTCCAACTTCTGTTCTCCGGTTCAGACATGATGAGATTCATGAATCAAATAAACCGGTTGAACCAGTTAATGAAGCCGAACCAGTTATTGAAGCTGAACCGGTTGGTGAATGTGAACCGAGTTTTTTTGACGAAACTGATGAGATATTCCGACAGGAAATGGAGGACGTGTTTAATTTTCCAACAACTTCTGATTACTATTACTCAAACATGTTTGAAGAAGCTCCTATGCAATTTGTTCATGAAACGACACCGGTTCTGTTTAATGAGTGTCGTTTCAGTGATCACGTGGAAATTAATAAAACGCACTCACCATCATCACCATCATCATCAGCTTTATGTGAAGGGGATGATTTTCTTGATGACATTTTGTTAGGTTTAGAGCCTCTCATTGCGCTTTGA 1098 0.4171 MNQQQQHSMNILCKTTVHESVTKKYIKPKRNIHARNNNNIKNSIQTELPKVIRVIATDPDATDTDSSSDESVSQFSNPRRIRIKQYVNKIEIETVASTVSASTVSRNKKRSSRELKSSRRPAKVQAITGDERKFRGVRMRPWGKWAAEIRDPASRVRLWLGTFSTAEEAAKVYDAAAIKFRGKDAVTNFSMVEENVEKDEVVNRTTTMKVEEIKTEISVSGEDSGDEFVNLSSPTSVLRFRHDEIHESNKPVEPVNEAEPVIEAEPVGECEPSFFDETDEIFRQEMEDVFNFPTTSDYYYSNMFEEAPMQFVHETTPVLFNECRFSDHVEINKTHSPSSPSSSALCEGDDFLDDILLGLEPLIAL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04667 365 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Vivi4g04667 365 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Vivi4g04667 365 Pfam AP2 domain 133 182 IPR001471 GO:0003700|GO:0006355
Vivi4g04667 365 CDD AP2 133 189 IPR001471 GO:0003700|GO:0006355
Vivi4g04667 365 ProSiteProfiles AP2/ERF domain profile. 133 190 IPR001471 GO:0003700|GO:0006355
Vivi4g04667 365 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 48 270 - -
Vivi4g04667 365 SUPERFAMILY DNA-binding domain 133 190 IPR016177 GO:0003677
Vivi4g04667 365 SMART rav1_2 133 196 IPR001471 GO:0003700|GO:0006355
Vivi4g04667 365 MobiDBLite consensus disorder prediction 101 124 - -
Vivi4g04667 365 Gene3D AP2/ERF domain 132 192 IPR036955 GO:0003700|GO:0006355
Vivi4g04667 365 MobiDBLite consensus disorder prediction 107 124 - -
Vivi4g04667 365 FunFam Ethylene-responsive transcription factor 2 132 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04667 Vivi-Chr4 174930363 174932140 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04667 13 304 AP2-EREBP Transcription Factor Family AT4G27950 36.792 1.12e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi4g04667 AP2 5.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04667 - - psat:127091686 503.827