Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04661 ATGAGAAACAAGATGGCCCTTTTATGCTTTTATTCAGAAACTTTCATAATTGGAGCAATGTTCTTTATTTGTATTGGAGCTGAACCAGTAGCAGATAAACAAGCTTTACTGGATTTCCTTCACAACATGAATCACTCTGCACATATCAATTGGAGCAAGAGTTCTTCTGTATGCAAAAAATGGACTAGAGTTACCTGCAATACCGAAAAATCAAGAGTTATATCGCTTCAGCTACAAAGTGTTGGATTGAATGGTTCAATTCCATCTAACACTCTTATTAGACTCACAGCACTTCAAAATTTGAATCTTGCTTCCAATAGTATAACTGGTTTCTTCCCTTCTGATTTCTATAAGCTGAAAAATTTGACCTCTCTTTTCCTCCAATTCAACAAGTTTTCTGGGCCATTGCCATTCGATTTTTCAGTTTGGAATAATCTAGCTGTTGTTGATTTTTCCAACAATGGTTTTAATGGAAGCATTCCTTTATCAGTTTCGAAGTTGACTCATCTCACTTCTTTGATTCTAGCTAATAACACTCTTTCAGGTGAAATTCCTGATATCAATATTGCTAGCCTGAAAGATCTCAATTTGGAAAACAATAATCTTAGTGGTGTTGTGCCTAAAACACTTCATAGATTTCCAAGATTGTCTTTCTCAGGTAACAATCTTACATTTGTAGATGTTTATCCTCCAAATTCTCATAAGAAAAGGAAAAAAACCAAAGGGCTTAAAGAACAAGCGTTATTAGGTATCATCATTGGTGGTTGTGTACTAGGAATTTTAATCATAGGAGTTTTCTGGATTGTGTGCTGTTACAAGAAACACGGTGAAGCGGGACAACTTGTTAAGTCTCAGAATAACAAAGAAGTTTTTTCTGATAAAAAAGAATCTTCTGAGAGTCTAGAACGAAACAAAATTGTTTTCTTTGAAGATTGCAATTATGTATTTGACTTGGAAGATTTGTTGAGAGCTTCTGCTGAGGTGCTTGGAAAGGGAACTTTTGGTACTGTTTATAAGGCTGCTTTAGAGGAGGCAACGACAGTCGCGGTTAAGAGGCTGAAGGAGGTTACGGTCGGGAAGCGCGAGTTTGAACAGCAGATGGAGATGGTTGGAGGGATTAGGCATGAGAATGTGGCTGCACTAAGGGCTTATTATTATTCAAAGGAGGAGAAACTTATGGTTTATGATTTTTATGAACAAGGCAGTGTCTCAGCAATGTTGCATGGCAAAAGAGGGGCAGATAGAATTCCTTTAGATTGGGAAACCAGGTTGAGAATAGCAATTGGTGTAGCAAGAGGCATTGCATACATCCATGCACAAGAAGAAGGAAAACTAGTCCATGGAAACATAAAAGCCTCAAACATTTTCCTCAACTCCAAAGGGTATGGTTCCATCTCTGACATTGGTCTAGCAACAATGATAATAAGTCCAACATCTCCAAGAGCAACAGGATACCTTGCACCTGAAGTAACCGAAACTCGAAAAGCAACTCCAGCGGCTGACGTCTATAGTTTCGGTGTCTTGTTACTTGAACTTTTAACTGGTAAATCTCCTTTACATGTAGGTGAGGAAGTTGTTCATTTGGTTAGGTGGGTGAATTCTGTGGTTAGAGAAGAATGGACTTCTGAAGTGTTTGATCTGGAGTTATTGAGATATCCTAATATAGAGGAGGAAATGGTTGAGATGTTGCAAATTGGTATGGCTTGTGTTGTGAGGATGCAAGATCAAAGACCAAAAATGGATGAAGTTTTGAGAATGGTTGAAGACATTCATAGGGGTACTAGTGGAAATAGACTTTCCACTGAATCTAGATCAGATGGTTCTACTCCAATAACTCCTCATGTAATGGAAACACCTATTTCTCTTCCACATTGA 1875 0.3797 MRNKMALLCFYSETFIIGAMFFICIGAEPVADKQALLDFLHNMNHSAHINWSKSSSVCKKWTRVTCNTEKSRVISLQLQSVGLNGSIPSNTLIRLTALQNLNLASNSITGFFPSDFYKLKNLTSLFLQFNKFSGPLPFDFSVWNNLAVVDFSNNGFNGSIPLSVSKLTHLTSLILANNTLSGEIPDINIASLKDLNLENNNLSGVVPKTLHRFPRLSFSGNNLTFVDVYPPNSHKKRKKTKGLKEQALLGIIIGGCVLGILIIGVFWIVCCYKKHGEAGQLVKSQNNKEVFSDKKESSESLERNKIVFFEDCNYVFDLEDLLRASAEVLGKGTFGTVYKAALEEATTVAVKRLKEVTVGKREFEQQMEMVGGIRHENVAALRAYYYSKEEKLMVYDFYEQGSVSAMLHGKRGADRIPLDWETRLRIAIGVARGIAYIHAQEEGKLVHGNIKASNIFLNSKGYGSISDIGLATMIISPTSPRATGYLAPEVTETRKATPAADVYSFGVLLLELLTGKSPLHVGEEVVHLVRWVNSVVREEWTSEVFDLELLRYPNIEEEMVEMLQIGMACVVRMQDQRPKMDEVLRMVEDIHRGTSGNRLSTESRSDGSTPITPHVMETPISLPH 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04661 624 Pfam Leucine rich repeat 76 132 IPR001611 GO:0005515
Vivi4g04661 624 MobiDBLite consensus disorder prediction 594 624 - -
Vivi4g04661 624 ProSiteProfiles Protein kinase domain profile. 323 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04661 624 FunFam pollen receptor-like kinase 1 292 397 - -
Vivi4g04661 624 SUPERFAMILY Protein kinase-like (PK-like) 327 587 IPR011009 -
Vivi4g04661 624 Pfam Protein tyrosine and serine/threonine kinase 327 585 IPR001245 GO:0004672|GO:0006468
Vivi4g04661 624 Gene3D Ribonuclease Inhibitor 30 239 IPR032675 -
Vivi4g04661 624 MobiDBLite consensus disorder prediction 594 615 - -
Vivi4g04661 624 FunFam Probable inactive receptor kinase RLK902 29 188 - -
Vivi4g04661 624 PANTHER OS05G0588300 PROTEIN 19 598 - -
Vivi4g04661 624 ProSitePatterns Protein kinases ATP-binding region signature. 329 360 IPR017441 GO:0005524
Vivi4g04661 624 SUPERFAMILY L domain-like 46 226 - -
Vivi4g04661 624 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 398 601 - -
Vivi4g04661 624 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Vivi4g04661 624 Gene3D Transferase(Phosphotransferase) domain 1 398 606 - -
Vivi4g04661 624 Gene3D Phosphorylase Kinase; domain 1 288 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04661 Vivi-Chr4 174823954 174827168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04661 27 601 Receptor kinase-like Gene Family AT4G23740 55.740 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi4g04661 PK_Tyr_Ser-Thr 2.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04661 - - aprc:113851984 842.032