Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04656 ATGGAGCATGGAAGTCACTCCCGTTCGACACATTCAAACTTTGTAGGTAATGAAACCACAAACATTGAGAACGCCAAAAACAATATCAACGACAATATTGAGAACCAACATTTACAAGAAACAGGGGATGAGGAAATTCATATGCCCATCAAGAATGTGACAAAAATCATGCAGCAGGCTATTCCCCCAGATGGAATAATCTCTAAGGATGCCAAGGAGTCAATTCAATTGTGTGTGACTGAATTTATGAACATCGTCACAAATGAGGCTAATGAGCGATGTAAGGCAGAGAGTCGAAAGATCATTAGGGGTGAAGATTTAATATGGGCTATGGATAAGTTGGGCTTTGAGGACTATGTTGGTCCTCTTCTTTTATTCCATAAAAAATATCTCAACCATGAAGCTCAATTGAGTAACATGCCATTTGAGCATGAGTTCAAGAAGGACGGATCAGGCGCTAGTGGCTCAAACATTGGTGGTGATATTGGCAAAATTTGA 498 0.3996 MEHGSHSRSTHSNFVGNETTNIENAKNNINDNIENQHLQETGDEEIHMPIKNVTKIMQQAIPPDGIISKDAKESIQLCVTEFMNIVTNEANERCKAESRKIIRGEDLIWAMDKLGFEDYVGPLLLFHKKYLNHEAQLSNMPFEHEFKKDGSGASGSNIGGDIGKI 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04656 165 Gene3D Histone, subunit A 34 154 IPR009072 GO:0046982
Vivi4g04656 165 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 23 135 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi4g04656 165 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 111 IPR003958 -
Vivi4g04656 165 SUPERFAMILY Histone-fold 44 134 IPR009072 GO:0046982
Vivi4g04656 165 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Vivi4g04656 165 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Vivi4g04656 165 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04656 Vivi-Chr4 174742503 174743947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04656 41 136 CCAAT-HAP3 Transcription Factor Family AT4G14540 48.958 1.89e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi4g04656 CBFD_NFYB_HMF 5.1e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04656 K08065 - qsa:O6P43_020714 122.864