Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04634 ATGCTTGAGACCCAGATTTCCCAAGTGGCACAAACCACCTCTGCACAAGTTGTACCTGGAGGACAATTCCTTGGACAAACTCAACCCAATCCCAAAGGCCAAGCAAATTCTATCACCTTAATAAGTGGAACCGCTTATGAAGGGCCTAAAAATCGTAACCTAAGCACACCAGAAAAACCCAAGGAAGATGCTGCACCCAAAGACCAGGTAGAGGAACCAGAGAAACCTGAAAAGCAATCAAAACCAGAAGTAGGGAATCACACACAACAACCTTACAAACCACCTCTTCCGTTCCCACAAAGGTTGAAAAACACCAAAACAGAAAACCAATCAATGAGAGGTATGGCACCTGTTAAAATGGAGCCCCAGCATAGTGATCAACCACTTTTGCATCAACAGCAACAACAGCAACAACAACAGCAGCAGCAGCAACAACTCCTCCATATGTCAAGGCAAACTTCTCAAGCTACTGCTGCACAGATGAATCTTTTACAACAACAGAGACTAATGCAATATCAACAACATCAGCAGCAGCAACTCTTAAAGTCAATGCCTCAGCAGCAGCAACTCTTAAAGTCAATGCCTCAGCAGCAACGATCCCAGCTACCCCAACAGTTTCAACAGCAGAATATGCCTATAAGGTCTCCTGTGAAACCAACATATGAATCTGGGATGTGTGCCAGGCGGCTGACACATTACATGTATCAGCAACAACATAGACCCGAAGATAACAACATTGATTTCTGGAGGAAATTTGTCGCCGAGTACTTTGCTCCTAATGCCAAAAAGAAGTGGTGCGTTTCCATGTATGGAAGTGGCAGAGAAACAGAACGGGTAATATCATTTACGACTGACGCGGCCGCTTTGACGCGGCATCGTTCTGAATCCAATCCCATTATTGTGCCCGTTCCAACCGAGTCACCCATATGTGATGGAACTGCACAGCCTGATGCAGTTTTCTTTATTTTGCTTTTCCGTGCAGAGGTTAGTCAGCTTGGAGCAGTTGCTCAAAAATATCAGGCATGCACACAAAATGCAGCACCCAATCTGTCCATTCCAGAGTTGCAAAATAATTGCAATTTGTTTGTTGCATCAGCCCGTCAGCTGGCAAAAGCCTTAGAAGTTCCATTGGTTAATGATTTAGGATACACAAAGAGATATGTGCGGTGCCTACAAATATCAGAAGTGGTAAATAGTATGAAAGACTTGATAGATTATAGCAGAGAAACAGGAACTGGACCTATGGACAGCTTGTCCAAATTCCCTCGGAGAACAAGTAATTCATCTGCACTTCATAGTCAGGCGCAACAGTCTGAAGATCAATTACAGCAGCAACAACAGCATATGGCGTCCCATAACTCAAATGGTGATCAGAACTCTGTGCAAGCTGCTGCCATGCAAATTCCTTCCAACAATGGTGTGGCAAGTGTAAATAACAATGTCAATTCAGCATCTGCTTCGACTACCACAAGCACCATTGTTGGACTTCTCCATCAGAACTCTATGAATGCTAGGCAGCAAAATTCAATGAAAAATGCAAGCAGTCCATATGGAGGTAATTCTTCCCATGTTCCATCCCCAGGTTCATGCAATAACACAGTGCCACAAGGGCAACCAAACTCGTCCCCTTTTCATTCACCGACACCGTCCTCATCTAACAATCCTCAAAATTCTCATCCGGGTATACCATCTGCAAATCACATGGGTGCAGCAAGCTCACCAGCTAATATTTCCTTGCAACAACAACAAACATCTATTTCCGGTGAAGCCGACCCAAGTAACGATGCTCAGAACTCGGTCCAGAAAATCATTCATGAGATGATGATGTCCTCTCAGATGAACGGAACAGGTGGAATGGTAGGTGCTAATTCTCTTGGAAATGACATGAAGAATGTAAATGGTATCCTACCAGGGAGTACTAATACTGGCCTAAACGGTGGCAATGTCATGATGGGTAATGGAGGCGTGAACAATAATCCTGGTGTTGGGGTTGGTGGTTATGGCACAATGGGTCTTGGTCCATCTGGTTTACCCAATGGAATGAGGCCAGGAATGGGAAATAATTCAGTCATGAATGGAAGAGTAGGAATGTCATCGATAACTCGGGAACAGGCTATGAATCATCAACAGGATTTGTCAAGTCAACTGCTTAGTGGGTTTCAATTTGATTAG 2172 0.4415 MLETQISQVAQTTSAQVVPGGQFLGQTQPNPKGQANSITLISGTAYEGPKNRNLSTPEKPKEDAAPKDQVEEPEKPEKQSKPEVGNHTQQPYKPPLPFPQRLKNTKTENQSMRGMAPVKMEPQHSDQPLLHQQQQQQQQQQQQQQLLHMSRQTSQATAAQMNLLQQQRLMQYQQHQQQQLLKSMPQQQQLLKSMPQQQRSQLPQQFQQQNMPIRSPVKPTYESGMCARRLTHYMYQQQHRPEDNNIDFWRKFVAEYFAPNAKKKWCVSMYGSGRETERVISFTTDAAALTRHRSESNPIIVPVPTESPICDGTAQPDAVFFILLFRAEVSQLGAVAQKYQACTQNAAPNLSIPELQNNCNLFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMDSLSKFPRRTSNSSALHSQAQQSEDQLQQQQQHMASHNSNGDQNSVQAAAMQIPSNNGVASVNNNVNSASASTTTSTIVGLLHQNSMNARQQNSMKNASSPYGGNSSHVPSPGSCNNTVPQGQPNSSPFHSPTPSSSNNPQNSHPGIPSANHMGAASSPANISLQQQQTSISGEADPSNDAQNSVQKIIHEMMMSSQMNGTGGMVGANSLGNDMKNVNGILPGSTNTGLNGGNVMMGNGGVNNNPGVGVGGYGTMGLGPSGLPNGMRPGMGNNSVMNGRVGMSSITREQAMNHQQDLSSQLLSGFQFD 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04634 723 Coils Coil 435 455 - -
Vivi4g04634 723 PANTHER LIM DOMAIN-BINDING PROTEIN 328 720 IPR029005 -
Vivi4g04634 723 MobiDBLite consensus disorder prediction 118 153 - -
Vivi4g04634 723 MobiDBLite consensus disorder prediction 20 102 - -
Vivi4g04634 723 MobiDBLite consensus disorder prediction 54 82 - -
Vivi4g04634 723 MobiDBLite consensus disorder prediction 508 572 - -
Vivi4g04634 723 MobiDBLite consensus disorder prediction 419 460 - -
Vivi4g04634 723 MobiDBLite consensus disorder prediction 126 153 - -
Vivi4g04634 723 Pfam LIM-domain binding protein 338 418 IPR029005 -
Vivi4g04634 723 Pfam LIM-domain binding protein 229 273 IPR029005 -
Vivi4g04634 723 MobiDBLite consensus disorder prediction 577 596 - -
Vivi4g04634 723 MobiDBLite consensus disorder prediction 408 460 - -
Vivi4g04634 723 MobiDBLite consensus disorder prediction 20 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04634 Vivi-Chr4 174319116 174324439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04634 110 723 C2H2 Transcription Factor Family AT1G43850 48.942 4.10e-109 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04634 - - vvo:131598347 1197.19