Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04633 ATGTGGCCCAATGAGTTTAACACCAAAATCGAAAACTGTTTCTCACCCAAAATCGAAAACGTTCTTCACCCCAAAATCAAAAATGTTCTTCACGCTGAAATCGAAAATCGCTCTTCACCCCGAAATCGAGAATCGTTCTTCACACTTAAATCGAGAATCGTTCTTCACCCTCAAATTGAAAATGTTCAATCGTTTACACAAATCGTTGACGAAAATGGTTCTATCACTGTGAGATTCCTTTTTCATCTTTCATTCACTGTGTGGTTGTTCATCGACACCGCGATATCCGTCGCTTCTCTGGACAACGCCGGCGAGTTGAAGCAACGGAGAGACGGAATCGTCGAGCGTCTTTACGCCGCCACCACTGCTCCTCCGCTTTGTCAGAATTGTGAAGGTGGAAGCCTTTTGACTGAGGGAAACCAAATCAGGAAACAGAGTAACCCTAGTTTAAGCCCTGAGCAAAATCAGCACCGTCGCGGCGGCTCGTCTCCTCCGACGCCGCAGTCGCAAGGAAACGATGATGAGGAAGATGAGGAGATAGATGCTTACGGTGGTTTGTTCGATGATGAACAGAGGAGGATTCTAGAAATTAAAGAGTTGCTTGAAGATCCGAGACAGACTGAAGATACTTTGTTGGAGTCACTGCAAAATCTGGTGGATATTGATATTACATTCCAAGAGTTGAAGGAGACTGACATTGGGAGGAACGTGAATCAGTTAAGGAAACATCCATCCAGCGATGTTCGCAGTTTGGTGAAGCTACTTGTCAAGAAGTGGAAAGAAATTGTTTCAGATTCCTTTTTCAACCATGTTTTAGGCATGATCATTTTCAGTTGTTAG 840 0.4405 MWPNEFNTKIENCFSPKIENVLHPKIKNVLHAEIENRSSPRNRESFFTLKSRIVLHPQIENVQSFTQIVDENGSITVRFLFHLSFTVWLFIDTAISVASLDNAGELKQRRDGIVERLYAATTAPPLCQNCEGGSLLTEGNQIRKQSNPSLSPEQNQHRRGGSSPPTPQSQGNDDEEDEEIDAYGGLFDDEQRRILEIKELLEDPRQTEDTLLESLQNLVDIDITFQELKETDIGRNVNQLRKHPSSDVRSLVKLLVKKWKEIVSDSFFNHVLGMIIFSC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04633 279 Pfam TFIIS helical bundle-like domain 215 263 IPR017923 -
Vivi4g04633 279 MobiDBLite consensus disorder prediction 143 170 - -
Vivi4g04633 279 SMART TFS2_5 194 265 IPR003617 GO:0005634
Vivi4g04633 279 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 188 267 IPR035441 -
Vivi4g04633 279 CDD TFIIS_I 193 263 - -
Vivi4g04633 279 ProSiteProfiles TFIIS N-terminal domain profile. 189 266 IPR017923 -
Vivi4g04633 279 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 84 265 IPR044790 -
Vivi4g04633 279 MobiDBLite consensus disorder prediction 143 178 - -
Vivi4g04633 279 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 192 266 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04633 Vivi-Chr4 174278781 174281705 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vivi4g04633 Med26 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04633 - - vvo:131598346 562.377