Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04628 ATGGTTATGCTCTATATGCCAGGCCTCGATGCAGCATTGCACTTGTCACTGTCCACGATACTTCCTAACTTGAAAAATTCATGCTGCAAACCAAGACCAGTAGTTCTTGCTCTAAGCCGTGTATCGAATGGTATGCAGACAATAGAAGCGCTACTAACATGCAATCAGAAAAGAAAAAGGGATCAAAACGGTTCATTTACGCCGAAATTTACTCCGAATTCTCAATCAGAAGATGACTGGGATGACACACTCGATCTATCATTTAAGGAGCTTACAAAAGACATACGTTTCCCTGTGAGAGACTATACACTAACCGATACCGAGCTGGATGAGAATAAATATCCTGTTGATAAGCCAGGTTTTGAGTCTACATTTCCTTACGACTCGGGGCGTCCTTTTCATAGAATGTTAGCAATTGATTGTGAGATGTGCATAACAAGAAAGGGGTTTGAACTGACAAGAGTCACTCTAGTGGATCTCCACGAACAGGTTGTGTTAGATAAATTAGTTAAACCTTCAAGTCCTATCCTTGATTACAAAACAAGATTTAGTGGAATAACTGCTGAGATGTTAGATGGGGTGACGACAAGTCTGGCAGACATTCAGGACGAATTTGTGAAACTTGTCAAGAAAGAAACCATTCTTGTTGGACATTCCTTGGAACATGATTTATCAGCATTGAAGATATCACATGACTTGGTGATTGACACGGCTGTATTATACCAATACTCCCGAGGGTCTTCTCATAAATCTGCTCGGTGGTCTAAATCTGCCGGGTCTTCGCGTAAACATTCTCTACGGTATCTTGCTAAAAGATTTCTTTCAAGGGAGATACAGCAACCGGGGACTGAACATGACAGCATTGAAGATGCTATAGCTGCCATGGAATTGGCAGTGTTGATGATCAGAATTCCCAAGTAA 921 0.4137 MVMLYMPGLDAALHLSLSTILPNLKNSCCKPRPVVLALSRVSNGMQTIEALLTCNQKRKRDQNGSFTPKFTPNSQSEDDWDDTLDLSFKELTKDIRFPVRDYTLTDTELDENKYPVDKPGFESTFPYDSGRPFHRMLAIDCEMCITRKGFELTRVTLVDLHEQVVLDKLVKPSSPILDYKTRFSGITAEMLDGVTTSLADIQDEFVKLVKKETILVGHSLEHDLSALKISHDLVIDTAVLYQYSRGSSHKSARWSKSAGSSRKHSLRYLAKRFLSREIQQPGTEHDSIEDAIAAMELAVLMIRIPK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04628 306 FunFam RNA exonuclease NEF-sp 133 305 - -
Vivi4g04628 306 SMART exoiiiendus 135 306 IPR013520 -
Vivi4g04628 306 CDD REX1_like 137 298 IPR034922 -
Vivi4g04628 306 Gene3D - 133 305 IPR036397 GO:0003676
Vivi4g04628 306 Pfam Exonuclease 138 297 IPR013520 -
Vivi4g04628 306 MobiDBLite consensus disorder prediction 60 74 - -
Vivi4g04628 306 SUPERFAMILY Ribonuclease H-like 136 300 IPR012337 -
Vivi4g04628 306 MobiDBLite consensus disorder prediction 60 79 - -
Vivi4g04628 306 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 2 302 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04628 Vivi-Chr4 174268607 174270241 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04628 135 297 C2H2 Transcription Factor Family AT2G48100 31.461 2.23e-10 58.9