Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04627 ATGAAGACGATTCTAACAAATGCACCGATTTCTACGATATCTATGGCTAAAGCAGAAGTTGTTTTCAAGTCACCAGAAGAAGATAGATCAACTCTGAATCTCGCTGATGTTCAAGGACTTGTAACTTGGGTTCTCGGCGAAGGTTTCATGCCATCTTGGGTTTTTATCAAGAATAAACCTCTTATTCACAAAGTGGTTATGCTCTATATGCCCGCCCTGGATGCAGCTTTGTACTTGTCACTGTCCAGATCGCTTCCTAATTTAAAAAAGTCGTGTGGCAAACCACGACCGGTCCTTGCTCTCAGCTGTATATCAGATAATATGCAGACAATAGACGCACTACTAACATGCAGGCAGAAAAGAAAAAGGGATCTAAATGCTTCAATTATTCTAAAATCTACTCAGACATCACAACAAGAAGAAGGCTGTAGTGCTACCCTCAATCTATCATTCACGGAGCTTACTAAAGACATACCTTTCCCTGTTACATACTATACACTAACAGAGAAAGATCTGGAAGAGAATGGATATCCTATTAATAAACCAGATTTTCTTTCTACTCTTCCCGCTCCTCCGGGGTCTCCTTTTCATGAGATGGTAGCAGTTGACTGTGAGATGTGCATAACAGGTGAGGGGTTTGAGCTGACGAGAGTTACTCTCGTGGATGTCAAAGGACAGGTTTTGTTAGATAAATTGGTTAAACCTTCAAATCCTATCACCGATTACAATACACGATTTAGTGGAATAACTGCTGAGATGTTAGATGGGGTGACAACAAGTCTGACAGACATTCAGAAAGAGTTTCAGAAACTGGTTTACCAAGAAACTATTCTTGTTGGGCATTCTTTGGAAAATGATTTATTAGCATTGAAGATATCACATGATTTGATCATTGACACGGCAGTATTATACAAACACCCTCGAGGGTCTTCCCATAAATCTGCTCTTCGGTTTCTTACTAAAAGATTTCTTTCAAGAGAGATACAACAATCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCTTGGAATTGGCAGTATTGAAGATCAGAAATGGGCCTGACTTTGGTGCTCCTCCATCCCTTATGCGGAAAAAGCTCCTTTCCATTTTGAGTGAGTCTGGCAAAAATTCTTCAGTGATTGATGATATATCCATTGTAAAACGATTTGCCTCGGAGTCCTCTAATGCAATTCCAGTGACATCTGATGAAGAAGCACTTGCAAAAACCATCCAGGAGTTGAAGAATGAAAAGGTGCATTTTATCTGGACTCAGTTTTCAGAGTTACACTCATACTTGAAGAAACAAGCTGAGGATTCAGATAGCTTGAATAAAAAAATTGCAGAGATGATTGCATTACATACATGTCAGAAGAGTAATTCAAATGGGAAAGGCCTCAAGCCGAATATATCTTCTGAACTGAAGGAAATTGTTACTCGCATGGATAATAAAATTCATAAACTGTATAAGTCATTACCAACAAATGCTATGATGATAGTTTGCACCGGTCATGGAGACACAGCAGTTGTTCGCAGGTTGAGGAAAATGCTTGAGGAGGAGGGTGAAAGTAATTTTGGTCGTGAGAAGATTTTGGAAAGCTTGCAAGAGTTTCAAGCTAGAGCTGAAGTAGCCTTGTGTTTTGTAGGTGTAAAACACTGA 1665 0.397 MKTILTNAPISTISMAKAEVVFKSPEEDRSTLNLADVQGLVTWVLGEGFMPSWVFIKNKPLIHKVVMLYMPALDAALYLSLSRSLPNLKKSCGKPRPVLALSCISDNMQTIDALLTCRQKRKRDLNASIILKSTQTSQQEEGCSATLNLSFTELTKDIPFPVTYYTLTEKDLEENGYPINKPDFLSTLPAPPGSPFHEMVAVDCEMCITGEGFELTRVTLVDVKGQVLLDKLVKPSNPITDYNTRFSGITAEMLDGVTTSLTDIQKEFQKLVYQETILVGHSLENDLLALKISHDLIIDTAVLYKHPRGSSHKSALRFLTKRFLSREIQQSGNGHDSIEDARATLELAVLKIRNGPDFGAPPSLMRKKLLSILSESGKNSSVIDDISIVKRFASESSNAIPVTSDEEALAKTIQELKNEKVHFIWTQFSELHSYLKKQAEDSDSLNKKIAEMIALHTCQKSNSNGKGLKPNISSELKEIVTRMDNKIHKLYKSLPTNAMMIVCTGHGDTAVVRRLRKMLEEEGESNFGREKILESLQEFQARAEVALCFVGVKH 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04627 554 SUPERFAMILY Alkaline phosphatase-like 363 509 IPR017850 -
Vivi4g04627 554 FunFam RNA exonuclease NEF-sp 196 359 - -
Vivi4g04627 554 SMART exoiiiendus 198 357 IPR013520 -
Vivi4g04627 554 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 23 375 IPR047021 GO:0004527
Vivi4g04627 554 SUPERFAMILY Ribonuclease H-like 199 352 IPR012337 -
Vivi4g04627 554 Gene3D - 196 356 IPR036397 GO:0003676
Vivi4g04627 554 CDD REX1_like 200 348 IPR034922 -
Vivi4g04627 554 Pfam Exonuclease 200 347 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04627 Vivi-Chr4 174252776 174261653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04627 199 347 C2H2 Transcription Factor Family AT5G40310 29.940 2.11e-09 57.8