Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04626 ATGGTAATTTTTCTGCGTTTCGTATATAATTATTTTCCAGTCGAAAAAAACACCCATTTCGTTATTCACAGTAACAATAACAACCATAACCATGACGGCTACCTCCGCCGAAACCTCTCTAACAAACTAAACTCCGCCGCAGCTCCTCTTCTCCGCGACTCACTTCCGGCGTCCAACCACCGTCACTTCCAGATAACAGCTTCCGCAAAAATGGAATCCTCGAAGAATCAATACGAATCCCTCTCTTCCATTGATGAAGACGATTCTAACAAATGCACCGATTTCTACGATATCTATGGTCCTGAGGCTAAAGCAGAAGTTGTTTTCAAGTCACCAGAAGAAGATAGATCAACTCTGAATCTCGCTGATGTTCAAGGACTTGTAACTTGGGTTCTCGGCGAAGGTTTCATGCCATCTTGGGTTTTTATCAAGAATAAACCTCTTATTCACAAAGTGGTTATGCTCTATATGCCCGCCCTGGATGCAGCTTTGTACTTGTCACTGTCCAGATCGCTTCCTAATTTAAAAAAGTCGTGTGGCAAACCACGACCGGTCCTTGCTCTCAGCTGTATATCAGATAATATGCAGACAATAGACGCACTACTAACATGCAGGCAGAAAAGAAAAAGGGATCTAAATGCTTCAATTATTCTAAAATCTACTCAGACATCACAACAAGAAGAAGGCTGTAGTGCTACCCTCAATCTATCATTCACGGAGCTTACTAAAGACATACCTTTCCCTGTTACATACTATACACTAACAGAGAAAGATCTGGAAGAGAATGGATATCCTATTAATAAACCAGATTTTCTTTCTACTCTTCCCGCTCCTCCGGGGTCTCCTTTTCATGAGATGGTAGCAGTTGACTGTGAGATGTGCATAACAGGTGAGGGGTTTGAGCTGACGAGAGTTACTCTCGTGGATGTCAAAGGACAGGTTTTGTTAGATAAATTGGTTAAACCTTCAAATCCTATCACCGATTACAATACACGATTTAGTGGAATAACTGCTGAGATGTTAGATGGGGTGACAACAAGTCTGACAGACATTCAGAAAGAGTTTCAGAAACTGGTTTACCAAGAAACTATTCTTGTTGGGCATTCTTTGGAAAATGATTTATTAGCATTGAAGATATCACATGATTTGATCATTGACACGGCAGTATTATACAAACACCCTCGAGGGTCTTCCCATAAATCTGCTCTTCGGTTTCTTACTAAAAGATTTCTTTCAAGAGAGATACAACAATCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCTTGGAATTGGCAGTATTGAAGATCAGAAATGGGCCTGACTTTGGTGCTCCTCCATCCCTTATGCGGAAAAAGCTCCTTTCCATTTTGAGTGAGTCTGGCAAAAATTCTTCAGTGATTGATGATATATCCATTGTAAAACGATTTGCCTCGGAGTCCTCTAATGCAATTCCAGTGACATCTGATGAAGAAGCACTTGCAAAAACCATCCAGGAGTTGAAGAATGAAAAGGTGCATTTTATCTGGACTCAGTTTTCAGAGTTACACTCATACTTGAAGAAACAAGCTGAGGATTCAGATAGCTTGAATAAAAAAATTGCAGAGATGATTGCATTACATACATGTCAGAAGAGTAATTCAAATGGGAAAGGCCTCAAGCCGAATATATCTTCTGAACTGAAGGAAATTGTTACTCGCATGGATAATAAAATTCATAAACTGTATAAGTCATTACCAACAAATGCTATGATGATAGTTTGCACCGGTCATGGAGACACAGCAGTTGTTCGCAGGTTGAGGAAAATGCTTGAGGAGGAGGGTGAAAGTAATTTTGGTCGTGAGAAGATTTTGGAAAGCTTGCAAGAGTTTCAAGCTAGAGCTGAAGTAGCCTTGTGTTTTGTAGGTGTAAAACACTGA 1926 0.4039 MVIFLRFVYNYFPVEKNTHFVIHSNNNNHNHDGYLRRNLSNKLNSAAAPLLRDSLPASNHRHFQITASAKMESSKNQYESLSSIDEDDSNKCTDFYDIYGPEAKAEVVFKSPEEDRSTLNLADVQGLVTWVLGEGFMPSWVFIKNKPLIHKVVMLYMPALDAALYLSLSRSLPNLKKSCGKPRPVLALSCISDNMQTIDALLTCRQKRKRDLNASIILKSTQTSQQEEGCSATLNLSFTELTKDIPFPVTYYTLTEKDLEENGYPINKPDFLSTLPAPPGSPFHEMVAVDCEMCITGEGFELTRVTLVDVKGQVLLDKLVKPSNPITDYNTRFSGITAEMLDGVTTSLTDIQKEFQKLVYQETILVGHSLENDLLALKISHDLIIDTAVLYKHPRGSSHKSALRFLTKRFLSREIQQSGNGHDSIEDARATLELAVLKIRNGPDFGAPPSLMRKKLLSILSESGKNSSVIDDISIVKRFASESSNAIPVTSDEEALAKTIQELKNEKVHFIWTQFSELHSYLKKQAEDSDSLNKKIAEMIALHTCQKSNSNGKGLKPNISSELKEIVTRMDNKIHKLYKSLPTNAMMIVCTGHGDTAVVRRLRKMLEEEGESNFGREKILESLQEFQARAEVALCFVGVKH 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04626 641 SMART exoiiiendus 285 444 IPR013520 -
Vivi4g04626 641 Gene3D - 283 443 IPR036397 GO:0003676
Vivi4g04626 641 CDD REX1_like 287 435 IPR034922 -
Vivi4g04626 641 SUPERFAMILY Ribonuclease H-like 286 439 IPR012337 -
Vivi4g04626 641 Pfam Exonuclease 287 434 IPR013520 -
Vivi4g04626 641 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 79 462 IPR047021 GO:0004527
Vivi4g04626 641 SUPERFAMILY Alkaline phosphatase-like 450 596 IPR017850 -
Vivi4g04626 641 FunFam RNA exonuclease NEF-sp 283 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04626 Vivi-Chr4 174252776 174261776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04626 286 434 C2H2 Transcription Factor Family AT5G40310 29.940 1.95e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04626 K14570 - gmx:100802793 902.123