Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04613 ATGAATCTTAATATCTCGGTATCTTCTCCACCGGTTATAGAAGTGTCTGATCAAGATATCGATGCTACCATTTCCATAGATTTAATCATTGATGTTCTGGAAGCCGGCAAAGTCATACCTGTTACATGCATCTCTGTGATTGGTGATCTAGATGTGAATGTTTTTTTGAATGATTTGTTTTACGTCTCTGTTTATTTGATAAAATCGAATTATGAAATTGATAATAAAAGTCTAATGATTCCACACAAGACAAAGCGCGGAGAGGCTGCACTTGCTAGATTAAAAGTATATGAGGGAATTCCTCCACATTCTGCCAGGTTTACTAGTTTAGCAAGTAAACTAGTGAAGTTAGTTAAGAGTAACTAA 366 0.3525 MNLNISVSSPPVIEVSDQDIDATISIDLIIDVLEAGKVIPVTCISVIGDLDVNVFLNDLFYVSVYLIKSNYEIDNKSLMIPHKTKRGEAALARLKVYEGIPPHSARFTSLASKLVKLVKSN 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04613 121 SUPERFAMILY Ribosomal protein L13 79 105 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vivi4g04613 121 PANTHER OS06G0309200 PROTEIN 1 49 IPR045897 -
Vivi4g04613 121 Gene3D Ribosomal protein L13 81 120 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vivi4g04613 121 Gene3D - 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04613 Vivi-Chr4 174116425 174116963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04613 79 102 Cytoplasmic Ribosomal Protein Gene Family AT4G13170 91.667 1.90e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04613 K05399 - vvo:131598345 228.409