Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04609 ATGGAAAATAATAACCACCAATTCATGTTCCTTCCCTTTCTTATCTTCTTCACCTTTCTCATAGCTACTGCTTCTTCTGCATCATGTCCTATAGATCTCAGCTACGTTGAAACCTTTCCATGGGACACATCAACCTGCAGAGACCCAATTGACACACAACACTGTTGTCAATCACTTCTCAGTCTTATTGGTATAGGACTTGCAAAACACCTCAAAGAAACTCAACTCTTTCAATTCCCAAATGAAAACATTTCCTCAGCATGTTTACAAGATTTCAAACTCAAACTTTCATCCTTAAAAATCCAACCCTCGTTAGTCCATACTTGTTTCCCAAACTCAACTCAGTTTGTCACCAACACTTCAAGCTGTGCAGGTATATCAAACATCACTGACTGGAAACAAAAAGTTGGTATGATTAGTCCTTTAGATACTTCTTGTAATGGTGATTTGAAATCTGAAACCACTTGTAGCATTTGTACTGATGCTGGTTTTAAAGTCACTTCTCAGCTTACAGATATTGATCCAAAAAATTCAACCAAGTGTTTTTACTTTTCAATTTTGTATGCTATTGGTATTGTGAATCAGTTTGGTCCTACAGATCCTGCAGCAGCTGCTTGTATACTTGGTATGCCACTTTCATCAACAGGGTCATCAAATAATGGAAAAGTACTGAAACTTGTTTTTGGTTTATTAGGTGCTATTGTTGGTGTTGTTCTTGCTTTTGTGTTGATTCTTATGTATAAAAAATGGAATAAGATGAGAAGGGAAAATCTTTATCACAGGTCAGTTGAAAACAGTGTTAGAGACAGTGTTTTGCCTAATACAGGAGCTAAATGGTTTCACATATCAGAACTTGAAAAGGCTACAAACAAGTTTTCATTGAAGAATAAGATTGGTCAAGGTGGTGATGGTGTTGTGTACAAAGGAACACTTTCAGATGGAACTTTGGTTGCTGTGAAAGAAATTCTTGATTTGGAAACTAGAGGAGATGAAGAGTTTTGTTATGAAGTTGAGATTATAAGCAAAATTAAGCATAGGTATCTTCTTGCTTTGAGAGGTTGTTGTGTTACAAGTCATAGTGTGAGAGGTAAGAGAAGGTTTTTGGTTTATGATTACATGCCGAATGGAAGCTTAAGCTATCAGCTATCAGTTAACGGTGCTAATAAGCTAACTTGGCCACAAAGGAAGAATATTATACTTGATGTAGCTAAAGGGCTAGCTTATTTGCATTACGAGATCAAACCGCCGATTTTTCATCGCGATATTAAGGCGACGAATATACTTTTGGACTCGAAAATGAAAGCGAAGGTCGCTGATTTCGGATTGGCGAAACAAGGTAATGAAGGACAGTCTCATCTAACAACAAGAGTGGCAGGAACATATGGCTATTTAGCACCTGAGTATGCTTTATATGGACAGTTGACAGAAAAAAGTGATGTTTATAGTTTTGGTATAGTGATACTTGAGGTAATGAGTGGTAGAAAAGTGCTTGATACAATGAATTCACCAGTTGTTTTGATAACTGATTGGGCTTGGTCACTAGCGAAATCCGGAAAAGTCGATGAAATATTTGATCAATCAATTAGAGATGAAGGGCCAGAGAAAATCATGGAAAGGTTTGTGCTTGTTGGAATTCTTTGTGCTCATGCAATGGTTGCATTGAGGCCTACTATAGCAGAAGCACTTAAGATGTTGGAAGGTGATATTGATATTCCTAATTTGCCTGATAGACCTGTGCCACTTGGTCATGAATCTTTTCAATCTTCTCTTTTGAATGGTATGCAACAAAGTGGAAGATCAACACCTTTTACTTCATTTTATTCTTCAAATATGAGCTCATTTAGTAGAAACTGA 1854 0.3689 MENNNHQFMFLPFLIFFTFLIATASSASCPIDLSYVETFPWDTSTCRDPIDTQHCCQSLLSLIGIGLAKHLKETQLFQFPNENISSACLQDFKLKLSSLKIQPSLVHTCFPNSTQFVTNTSSCAGISNITDWKQKVGMISPLDTSCNGDLKSETTCSICTDAGFKVTSQLTDIDPKNSTKCFYFSILYAIGIVNQFGPTDPAAAACILGMPLSSTGSSNNGKVLKLVFGLLGAIVGVVLAFVLILMYKKWNKMRRENLYHRSVENSVRDSVLPNTGAKWFHISELEKATNKFSLKNKIGQGGDGVVYKGTLSDGTLVAVKEILDLETRGDEEFCYEVEIISKIKHRYLLALRGCCVTSHSVRGKRRFLVYDYMPNGSLSYQLSVNGANKLTWPQRKNIILDVAKGLAYLHYEIKPPIFHRDIKATNILLDSKMKAKVADFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEVMSGRKVLDTMNSPVVLITDWAWSLAKSGKVDEIFDQSIRDEGPEKIMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPNLPDRPVPLGHESFQSSLLNGMQQSGRSTPFTSFYSSNMSSFSRN 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04609 617 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 68 595 - -
Vivi4g04609 617 Pfam SPARK 24 182 IPR043891 -
Vivi4g04609 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Vivi4g04609 617 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 373 573 - -
Vivi4g04609 617 CDD STKc_IRAK 298 567 - -
Vivi4g04609 617 ProSiteProfiles Protein kinase domain profile. 292 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04609 617 Pfam Protein kinase domain 293 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04609 617 Gene3D Phosphorylase Kinase; domain 1 253 372 - -
Vivi4g04609 617 SUPERFAMILY Protein kinase-like (PK-like) 277 589 IPR011009 -
Vivi4g04609 617 SMART serkin_6 292 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04609 617 FunFam Receptor-like serine/threonine-protein kinase At4g25390 257 372 - -
Vivi4g04609 617 Gene3D Transferase(Phosphotransferase) domain 1 373 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04609 Vivi-Chr4 174077962 174080150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04609 18 595 Receptor kinase-like Gene Family AT1G11050 52.145 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vivi4g04609 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04609 - - mtr:25482441 1052.74