Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04607 ATGTCAAAATCAAAGTCATTTCAAGGCGTAAACGTGTTCATGTCGCGAAACCTAGTTCCGCCGGAAGTATTCGACACGCTTCATGACGCCGTTAAAAATAACGGCGCTCAGATTCACCTTTGTTGCGATCCTTCCCGTAATGGCCCCAATGATTATCACATTATTTCTTGCAGTAAACACGAGAAATTTGAAGATCTTAAATCCAAAGGCTGTAAAATGCTAGGTCCTAGATGTGTTCTTTTGTGTGCTAAAGAACGAAGGCCTCTGCCTAAACAAGGTTTCACCTGTTGCTTTACTATGGACGGTGTCAAAATACTTGCCTCTGGCTTTGATGCGGACGAGAAGGTTAAAATAGAAAAATTAGTGACTGAAATGGGGGGAGCTCTACAGACTAAACCGTCCTCAGATTTGAACTTTGTCATTGTGAAAAATGTTTTGGCTCTAAAGTACAAGTGGGCTTTGAATATCCTGAAGAAACCAATAGTTACTTATGAATGGTTAAAACAATGCTCAGATGAGCATCGCGTTGTTCCTCAAGAGTCATATAAGGTTCTTCCTTTCTCGGGGCTAAAGATCTGCGTGACTGGAATCCCACCAGATCAGCGGAAAGAGATGGAAAAGCTTATTCTACAAAATGGTGGAGAATACTCTGCAGAATTGACAAAGAAGTGCACACATTTGATTTCTGATGCTCCTGAAGGTGATAAGTATAAGGTGGCAAAACGTTGGGGCCACATTCATATTGTGACAATGAAATGGTTTGATCAATCTGTTGTCCGGAGAGCATGTCTGAATGAGGAGTCCTACCCTGTACAGAGTGGATCTTTATCTTCACGTAAGGTGACTAGGGACTCAACTGTGAAGCATAGCCAGGAAAGGGATATTGGGAAAATGCAATCTGGGTCATCCTCAAGAGCCGCAGATTCAAATATGCTAGTTTCTGATTGTGCCGAGTCTATGGATTTAGATCTAGACGCTACACAGTCAGAACACATGTCGTCTTTTTCAAATGTTCCATTATTTGTTAAAGAGGCAGACGCTGAAGCACCTCCATTGCAGAATGAATTGAACTTGGACGGTGCTGTTGCCAATGATTCTGAATCCGATGACAATGACCTGTACTTGGCAGAATGTAGGATATTACTTGTTGGTTTCGAAGCTTCTGAAATGCGGAAGCTTGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGATACATGTATTTTAATGATAAGTTGACACACATAGTAATTGGGAATCCTACAGAAATGGAAAAGAAGGAGGTAAGAAGTATTGCCGCTCTTGGTGTCGTTTATGTTGTTAAAACCTCATGGCTTGAAGACTGTGACCGTGTAAAGAAACAAGTCCCCGTTCTTCGACGACACATTGCATGTGATCTTCTTCTTCCAAAAGGAAAAGGAGCAGTAACTGGCATTATGCCTATGGATCAAAGTAAAAGCTCAAGCTTTCGTCAAAGCTATCAGACTAATCAGGTGGCGGGTGTTAAGGACTTTGGAGTTACAATACCAGAATCATTGGATAAAAGCAAACAAGAGAAACACAGTATGGGTATGAATGTTGTCACATTCGGTAAAGCATCAGATAGAACTATGCCGCAAACTCAACATCCTGATAAAACATTGAGGGTACAAAAGAGTACGCAACATGACTCCAATGTACATGTGAAGTCAATTCATGTTTTCAAAGGGAAAACATTTTGTTTCTCAAATTTATTTCCAGAAGAAAGGAGACCTGAGATTGTTCAATGGATAAGTCAAGGGGGAGGAGAGCTAATAAGTGGGCAAACAAAACAGATTATCCACTATACTATTGAATGTCATGGTGTGAAACCCAGGTCAACAGTTGATTATGAAAGTAAATATATTTCCAGTCACTGGATACGATCTTGTTTGGAGGATGGATCCTTGCTGGATGTGGACAGTCATATTCTTTATTCTCCACTTCCCTGCCGTGTTCCCTTGCCTGGTTTTGAAAGCCTCCGGTTTTGTGTTTCACAATATGAGGAGAAGGACAGAATTCTACTTTGGAACATGTGTAAGGTTCTAGGAGCTAAATTTGCAGAGAAATTGTCTAAGAGGGTCACCCATTTGTTGTGTAAATTCACCAATGGGCCCAAGTATGAGGCTTCTTGTAAGTGGGGGATCCGATCAGTTACATCTGAATGGATATTTGAATGTGTTAAACAGAATGGAGTTATTGCAATTGATCAATTTTTGCCCAAAGAAGTCACTAGTCAAGACCGAGAGGCAGGAGTTTGCACAGTGAGTCAATTTCCTACCCAGGCTGTTCGAATGATAAATGACACGCCGTCCCAGTTTCCAAGTCAATCACAAAGTTTGAGAAGCACAACAAATAAAAATGTAGATAGGGGAGTTGACAATCATAGGACTCGTTCTAAAACATCAAGCATTAATAGCAAAAAGGCAAGGCTCGTCGAAGAACCTGACCAGTATAATAAGGCGCCTTCTGCAGTCAATTCAGGCATTCATGTCTCTGACTTTAATTTTTCTGAAGACAATATGCTCAAAGATTCTCGGGAGGTATCCCATGCTGGTCCTGATGTTGCTACTGCTATAGAGGACTTATTAGAGCAGACAAGCAAGATGCATGATCAGAGGTCTCCAGGGAATACAGGGTGTGAGAGAAGTATTTACTCATCTGATTGTTCAGCCATTGGCCAAGACAATCCAAATCCTCACACTGTCTACGGATTATCAAAGCACTGGTTAAACAGAAATGGAAGAAACGGAGATAATGGTGAGACTCCTCCTCAAGAGCGAAAAGCTGGAATGTATGATGGTTTTAGTGAAACACAAACAGAATCTCAGGTTGTTAGTTATGAAGAAGACTTGTCTGGAAGGCAAATGCTTATAGATAGAGTTCTAACTCGAAGTAGCATGCAGTGA 2925 0.4123 MSKSKSFQGVNVFMSRNLVPPEVFDTLHDAVKNNGAQIHLCCDPSRNGPNDYHIISCSKHEKFEDLKSKGCKMLGPRCVLLCAKERRPLPKQGFTCCFTMDGVKILASGFDADEKVKIEKLVTEMGGALQTKPSSDLNFVIVKNVLALKYKWALNILKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGIPPDQRKEMEKLILQNGGEYSAELTKKCTHLISDAPEGDKYKVAKRWGHIHIVTMKWFDQSVVRRACLNEESYPVQSGSLSSRKVTRDSTVKHSQERDIGKMQSGSSSRAADSNMLVSDCAESMDLDLDATQSEHMSSFSNVPLFVKEADAEAPPLQNELNLDGAVANDSESDDNDLYLAECRILLVGFEASEMRKLVNMVRKGGGSRYMYFNDKLTHIVIGNPTEMEKKEVRSIAALGVVYVVKTSWLEDCDRVKKQVPVLRRHIACDLLLPKGKGAVTGIMPMDQSKSSSFRQSYQTNQVAGVKDFGVTIPESLDKSKQEKHSMGMNVVTFGKASDRTMPQTQHPDKTLRVQKSTQHDSNVHVKSIHVFKGKTFCFSNLFPEERRPEIVQWISQGGGELISGQTKQIIHYTIECHGVKPRSTVDYESKYISSHWIRSCLEDGSLLDVDSHILYSPLPCRVPLPGFESLRFCVSQYEEKDRILLWNMCKVLGAKFAEKLSKRVTHLLCKFTNGPKYEASCKWGIRSVTSEWIFECVKQNGVIAIDQFLPKEVTSQDREAGVCTVSQFPTQAVRMINDTPSQFPSQSQSLRSTTNKNVDRGVDNHRTRSKTSSINSKKARLVEEPDQYNKAPSAVNSGIHVSDFNFSEDNMLKDSREVSHAGPDVATAIEDLLEQTSKMHDQRSPGNTGCERSIYSSDCSAIGQDNPNPHTVYGLSKHWLNRNGRNGDNGETPPQERKAGMYDGFSETQTESQVVSYEEDLSGRQMLIDRVLTRSSMQ 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04607 974 SUPERFAMILY BRCT domain 186 272 IPR036420 -
Vivi4g04607 974 FunFam DNA topoisomerase II binding protein 1 187 279 - -
Vivi4g04607 974 FunFam Transcription coactivator 97 185 - -
Vivi4g04607 974 Gene3D BRCT domain 658 751 IPR036420 -
Vivi4g04607 974 CDD BRCT_TopBP1_rpt2_like 186 258 - -
Vivi4g04607 974 Gene3D BRCT domain 359 459 IPR036420 -
Vivi4g04607 974 FunFam Transcription coactivator 352 462 - -
Vivi4g04607 974 SUPERFAMILY BRCT domain 624 747 IPR036420 -
Vivi4g04607 974 Gene3D BRCT domain 33 94 IPR036420 -
Vivi4g04607 974 ProSiteProfiles BRCT domain profile. 562 650 IPR001357 -
Vivi4g04607 974 Pfam twin BRCT domain 190 253 IPR001357 -
Vivi4g04607 974 Pfam twin BRCT domain 666 728 IPR001357 -
Vivi4g04607 974 CDD BRCT_TopBP1_rpt2_like 661 736 - -
Vivi4g04607 974 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Vivi4g04607 974 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Vivi4g04607 974 Gene3D BRCT domain 186 272 IPR036420 -
Vivi4g04607 974 CDD BRCT 103 170 - -
Vivi4g04607 974 Pfam BRCA1 C Terminus (BRCT) domain 101 170 IPR001357 -
Vivi4g04607 974 SUPERFAMILY BRCT domain 565 652 IPR036420 -
Vivi4g04607 974 MobiDBLite consensus disorder prediction 776 793 - -
Vivi4g04607 974 SMART BRCT_7 564 640 IPR001357 -
Vivi4g04607 974 SMART BRCT_7 372 452 IPR001357 -
Vivi4g04607 974 SMART BRCT_7 660 736 IPR001357 -
Vivi4g04607 974 SMART BRCT_7 184 261 IPR001357 -
Vivi4g04607 974 SMART BRCT_7 97 174 IPR001357 -
Vivi4g04607 974 MobiDBLite consensus disorder prediction 534 554 - -
Vivi4g04607 974 FunFam Transcription coactivator 560 656 - -
Vivi4g04607 974 ProSiteProfiles BRCT domain profile. 370 462 IPR001357 -
Vivi4g04607 974 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Vivi4g04607 974 MobiDBLite consensus disorder prediction 274 308 - -
Vivi4g04607 974 MobiDBLite consensus disorder prediction 776 811 - -
Vivi4g04607 974 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 8 971 - -
Vivi4g04607 974 Gene3D BRCT domain 560 656 IPR036420 -
Vivi4g04607 974 SUPERFAMILY BRCT domain 371 456 IPR036420 -
Vivi4g04607 974 ProSiteProfiles BRCT domain profile. 663 746 IPR001357 -
Vivi4g04607 974 MobiDBLite consensus disorder prediction 916 943 - -
Vivi4g04607 974 Gene3D BRCT domain 98 185 IPR036420 -
Vivi4g04607 974 Pfam BRCT domain, a BRCA1 C-terminus domain 565 647 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04607 1 973 Core DNA Replication Machinery Family AT1G77320 49.464 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04607 K10728 - gmx:100804966 1440.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04607 4 174028443 174047168 Vivi4g04607 4 174028443 174047168 ECH