Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04606 ATGCTAAAAATATTTCATAGGAAGTACAAAAGGGAGAAGGAAGATGTGCAGTTATCGACAATATTTGATTTTTCACTCATATCCAACGCTACGAATCACTTTTCAGAAAGTAACAAGTTAGGGCAAGGTGGTTTTGGACCAGTATACAAGGGCATATTGGAAGATGAACTAGAGATTGCAGTCAAGAGGCTATTAAAAACTTGTGAACATGGAGAAGAACAGTTCAAAAATGAAGTCATGTTGATGGCAAAGCTCCAACATCGCAATCTTGTTAAACTTCTTGGTTGTTCGATTCATCAAGAGGAAAAGCTCTTAATCTATGAGTTCATGCCTAATAGAAGCTTGGATTATTTCATTTTTGATTCAACTAGAAAGAAACAATTAGATCTGACAAAACGGTTCCAAATTATTGACGGGATTGCTCGAGGGGTGCTATATCTTCATCAAGACTCAAGATTAAGAATCATCCATAGAGACTTGAAAACAAGTAATATTCTTCTTGATAATGATATGAATCCAAAAATATCAGATTTCGGTCTAGCTAGAACATTCAGAGGCGATCTAGACGAGTCCAATACAAATCGATTGATGGGAACATATGGTTATATGCCTCCTGAATATGCGGTGCACGGATCATTTTCAATAAAATCAGATGTTTTTAGTTTTAGTGTAATTGTTATAGAGGTAATTAGTGGGAGAAAGATTCGGAATTTTTATGACCCTCATCGTCATCTTAATCTTCTTGGTCATGCATGGAGACCATGGAATGAAGCAAAGGCACAAGAGCTAATGGATGACATATTCCATGGTACAAGTACAACCATTCCATGTGACATATTGAAATGTATTCATGTTGGTCTACTGTGTGTGCAACAGATACCAGAACAAAGACCTAACATGTCATCTGTGGTCTTAATGTTGAATGGCGAAAAACTGTTGCCGGAACCTAGCCAACCGGGGTTCTATGCTGGAACAACTCATCATCCAATTCAGGTAGAATCTTCTTCAATAAGTTATGGAGATTGTTCACAAAATGAAGCTTCTGTGACATTATTCGAGGCGCGATAG 1068 0.3727 MLKIFHRKYKREKEDVQLSTIFDFSLISNATNHFSESNKLGQGGFGPVYKGILEDELEIAVKRLLKTCEHGEEQFKNEVMLMAKLQHRNLVKLLGCSIHQEEKLLIYEFMPNRSLDYFIFDSTRKKQLDLTKRFQIIDGIARGVLYLHQDSRLRIIHRDLKTSNILLDNDMNPKISDFGLARTFRGDLDESNTNRLMGTYGYMPPEYAVHGSFSIKSDVFSFSVIVIEVISGRKIRNFYDPHRHLNLLGHAWRPWNEAKAQELMDDIFHGTSTTIPCDILKCIHVGLLCVQQIPEQRPNMSSVVLMLNGEKLLPEPSQPGFYAGTTHHPIQVESSSISYGDCSQNEASVTLFEAR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04606 355 CDD STKc_IRAK 40 309 - -
Vivi4g04606 355 Gene3D Transferase(Phosphotransferase) domain 1 110 313 - -
Vivi4g04606 355 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 2 109 - -
Vivi4g04606 355 SMART serkin_6 34 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04606 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Vivi4g04606 355 Pfam Protein tyrosine and serine/threonine kinase 37 305 IPR001245 GO:0004672|GO:0006468
Vivi4g04606 355 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 333 - -
Vivi4g04606 355 SUPERFAMILY Protein kinase-like (PK-like) 21 331 IPR011009 -
Vivi4g04606 355 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 110 315 - -
Vivi4g04606 355 Gene3D Phosphorylase Kinase; domain 1 3 109 - -
Vivi4g04606 355 ProSiteProfiles Protein kinase domain profile. 34 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04606 Vivi-Chr4 174016724 174024166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04606 22 321 Receptor kinase-like Gene Family AT4G23230 56.146 7.24e-124 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi4g04606 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04606 - - vvo:131596010 701.049