Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04601 ATGATCACCGGACGCTCCGCCTCCAGTGGAGGCCGTACTGTCGTGGTTGGTGTCAAGATGGAGGATCATTCTCACAGTCACTGCTCGGAGTTGCTTACTTGGGCGTTAGTTAATGTCGCTCAACCTGGTGATCTTATTGTGGCTCTTCATGTTCTTCCAAATCACGAAACTGTGAATAGAGATGGGAAATCGTCTTTGTTTTCTCTTGTTAAAGCATTTGATTCTATTCTTTCTGGTTATGAAGGATTCTGCAATTTGAAACAGGTGGATCTGAAGCTTAAGATTTGCCGGGGTTCGTCGGTGAGGAGGATTTTGGTTAGAGAAGCAAATGATTATTGTGCAACTCATGTTATAGTTGGAGCACCGCGAGGTTTTAGTAAAATTAGACCATCTATTTCTATAGGAAGGTATTGTGCTAAGAAGTTATCTAAGGATTGTTGGGTTTTTGCTGTTGATAATGGGAAAGTTGTGTTCAAGAGAGATGGATCATCGTCTACGAATTGCGCCGATTTAAAAGGCAGTCGAGTTGGGTTGCTTGGTTCGATTCAATGGAAATTCGGCAAGAGTTCAAAAGTACTGAATGATGATATGCAAGATTCGATATTGTCAGATTCATCTTGCTACAAAGCTGGAGATCGAGAGTCTTATGGTGGCAGTGATAGGGAGAACGAAAAGAACTTGTTAGCTATGGTGCCTGTAAAGGTAACTGATGCCGGTTCGAGCATGAAAACTTTGCATTACAGAGAGGTGGCTGATTTGAAACCTGGTTGGCCACTACTACATAGCAGAATTTCATCATCGGACAGGAGATTTTCTGAAAGATCTTCGTTTCCTAAGATTTCTGTGGTTCAATGGGCAATGCAGTTGCCCTCTAGAAATCTTTCATATGATAAAGATCAATTATTGGGTCTAGATAGCAAAAGTGGTGCTCTTGTTCCGGTGGATGCTGAAATAGGGACAATTGCTTCACCCGAACGCAAATCCGTAAACATTCCTAAAGAATTGGTGGGGCTTCATGAGAAATACTCATCGTCTTGTAGATTGTTTAAGTACCAAGAACTTGTATCAGCAACATCAAATTTCTTGCCTGAAAATTTGATAGGGAAAGGAGGAAGTAGTGAGGTTTATAAAGGCTGTCTTCCTGATGGAAAGGAAGTTGCTGTTAAGATCTTAAAGCCTTCGGATGATGTTTTGAAGGAATTTGTTTTAGAGATAGAAATTATCACTACTTTGCATCACGTAAACATCATTTCCCTCGTTGGATTTTGCTTTGAAGATGATAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGGAGCCTTGAACACAACCTTCACGGTAATAAGAAAAATCTACTCGAGTTCGGTTGGACCGAGAGATATAAAGTGGCACTGGGTGTTGCCAAGGCATTGGAGTATCTGCATAATAATGGTGACCAAACTGTGATCCATCGCGATGTAAAATCATCAAATGTGTTATTATCCGAGGATTTTGAACCTCAGCTCTCTGACTTTGGACTCGCTAAATGGGCATCATCCTCATCATCATATACAACTTGCACCGATGTTGCCGGAACTTTTGGTTACTTGGCTCCTGAATACTTCATGTATGGTAAAGTAAATGATAAGATTGATGTCTATGCATTTGGCGTCGTGCTTCTTGAGCTTCTTTCAGGGAGAAAGCCTATAAGTGGCGATTATCCTAAGGGTCAAGAGAGCCTTGTCATGTGGGCAAGTCCGATTCTAAATAGTGGGAAGCTGTCGCAATTGTTGGATCCTAGTTTGGGTGATAACTATGATCATGAAAAGATAGAAAGGATGGTCTTAGCAGCCACACTTTGTATCAGGCGTGCTCCGGGAGCTAGACCTCAAATGAACCTTATCTCAAAGGTTCTTAAAGGTGATGCTGTAGTAATGAAGTGGGCAAGGATAGAAATTAATGCTTTGAAAGCTACAGAATTGCTTGATGAAGAAGCTTCTCCAACTTCTAACTTACAGTCACACCTAAATCTTGCACTGCTTGATGTGGAGGACGACGCACTCTCCTTATGGAGTGTTGATCAAAATGTCTCTTTAGAGGACTACTTGAGAGGCAGGTGGAGCCGTTCATCTAGCTTCGATTGA 2124 0.4148 MITGRSASSGGRTVVVGVKMEDHSHSHCSELLTWALVNVAQPGDLIVALHVLPNHETVNRDGKSSLFSLVKAFDSILSGYEGFCNLKQVDLKLKICRGSSVRRILVREANDYCATHVIVGAPRGFSKIRPSISIGRYCAKKLSKDCWVFAVDNGKVVFKRDGSSSTNCADLKGSRVGLLGSIQWKFGKSSKVLNDDMQDSILSDSSCYKAGDRESYGGSDRENEKNLLAMVPVKVTDAGSSMKTLHYREVADLKPGWPLLHSRISSSDRRFSERSSFPKISVVQWAMQLPSRNLSYDKDQLLGLDSKSGALVPVDAEIGTIASPERKSVNIPKELVGLHEKYSSSCRLFKYQELVSATSNFLPENLIGKGGSSEVYKGCLPDGKEVAVKILKPSDDVLKEFVLEIEIITTLHHVNIISLVGFCFEDDNLLLVYDFLSRGSLEHNLHGNKKNLLEFGWTERYKVALGVAKALEYLHNNGDQTVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASSSSSYTTCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNSGKLSQLLDPSLGDNYDHEKIERMVLAATLCIRRAPGARPQMNLISKVLKGDAVVMKWARIEINALKATELLDEEASPTSNLQSHLNLALLDVEDDALSLWSVDQNVSLEDYLRGRWSRSSSFD 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04601 707 ProSiteProfiles Protein kinase domain profile. 361 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04601 707 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Vivi4g04601 707 SMART serkin_6 361 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04601 707 Gene3D Phosphorylase Kinase; domain 1 326 435 - -
Vivi4g04601 707 Pfam Protein kinase domain 365 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04601 707 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 11 152 - -
Vivi4g04601 707 PANTHER OS08G0249100 PROTEIN 222 640 IPR046958 -
Vivi4g04601 707 SUPERFAMILY Protein kinase-like (PK-like) 342 630 IPR011009 -
Vivi4g04601 707 Gene3D HUPs 12 151 IPR014729 -
Vivi4g04601 707 Gene3D Transferase(Phosphotransferase) domain 1 436 644 - -
Vivi4g04601 707 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 330 435 - -
Vivi4g04601 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Vivi4g04601 707 FunFam Putative receptor-like serine/threonine-protein kinase 436 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04601 Vivi-Chr4 173959699 173963622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04601 349 632 Trihelix Transcription Factor Family AT1G70460 46.021 7.02e-78 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi4g04601 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04601 - - gmx:100305405 944.11