Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04599 ATGGTCGTGAACGGGAACGTGAATTCAGTCGTACTCCACCTAAGAAACAGATTCAAAAGAAGAGTGCTCTTCTTAGAATCCAGACGGGGTAACAATAAAGATCAACATGGAGGAGGTTACTCAAAGGCTGAGGATAGGAAAAAAGGAAGCCCAGTTGAACTTGACATTTCTTTTGAATCAAACTCTCTTGTGGCCAAGGCTATTGTCACACCCCCACCTTCCACTTCTGGTGCCGCCGCTGCTCCTGTTTATGGTAAACTGTCTTCTGTTGTTGAAATTTTGAATGATAATAATAATACTTCGCAGAAGAATGCAGGTGATGCTTGTAATCCTTGTGACAAACGTGGGGTGGCAGTTTCTGTTAATCCTAGTGGCACTGGTAATCGGAAATTGGCCTCTAAGGTTGTCAAGAAGAAGAAAATTGTTAAGAGAGTGGTGAAGAAAGGTTCCGTAAATCCTACTAGTTCAAGCGCGCTGGCTTCACCTTCTCTCGCCAAAGAAGTTGGTGGAACTGTGCAAGCAGGTAGTGTAACACACGACTCGTCCAATGCTGCCTCTGAAAATGTCAAAGCTGAAACTTATTTGGAGGAGAAAATCAATGCTGTTGATAAGGTGTCCGCGCCAGACAGTGAAAAGTGTGAAGATAAAAATGGGAGTTTGTCCCTGCTGAGTCTGGGGCCAGAATTCAGATCACAAGAATGTAAGATCAATGAAGATTCTGATATTGGGAAAGAATCCAGGTTTGAAAGAGGTGGAAGTATCTCAAGCGCTCCATCTTGTGCTTCTAGTAGTGTAGATAAAAACTGTGGTTCTGATAGTGATTGTTTAGATGTGTGTAATTCTGTCCATGACTTGCTTAGCGTGACAAAAATTGACAAACCTACTAAGTCATTAGATGGAAGCACTTCTGAACTCAATCACTTGGATTGTGGGAACAAGCAATTATGTCGGAGTGAAGTATCTCTATCACCTGGGAAGTATATAGATGTTGGATGTTCAGAGAATAGGAATCCTGTAGACGTAGGGAATGAATTGAATTCCAATGTCGTTTCAGATGATATTATAAATACACATAATTCTGCTGATGACAGCGTTTATGGCTTCAATTCCAACGATCTTGCAAGTTCAGAAGAGAAGAAAATTACTGTCAATGATAGTGAGAATAATAATGACATTGATGCAGGGGCTTATTGTGAAAAGACTGGTCTTGCTATCACTACATTGGAACAAAATTCAGATACAGCCATAAGGAATGAATTGAATTCCAATGTCGTTTCAGCTGATATTATAAATTCACATAATTCTGCTGATGACAGCGTTTACGGCTTCAATTCTAACAATCTTACAAGTTCAGAAGAGAATAAAATTACTGTCAATGATAGTGAGAATATCAATGACATTGATGCAGGGGCTTATTGTGAAAAGATGGGTCTTGCTATCACTACATTGGAACAAAATTCAGATACAGCCATCCCTCTGCCATGCGGTGGAATGGTTGCCTCTTCAAGTTTAGGAGATATTAGGATTCAGGATGGTCAAGATTGCCTACAACATACCAGTGTACTGAACAAGGGTTCTGATGATGGATCGTCTAGTTTAGAAGAGAGTATTGTTGTTCACCAATTTGGTATAATTAAAGATGCTGAAAAGCAAGTGTCCCCTGGTGAAGTTCCCGTATATGCTGAGAATTGCGACATAGATAAAACATTTCCAAATTCTAATATTTCACTTGGATTTGAAGTAAGGGATACAAGTAAAGTAGAAAAGAGAAATGTTAAGACTCGTTTAAATTTTTTGAGTTTGGATTTGGATGATATATCTCTTACTCCAGTTACCCATTCAAATGATGCTGATAGAGGCTCAAGAATTTTATTGAAGGATCCATGTTCTTCAGAAGTCCTAGATCATTCTATTCAAAGGCTAGACTTTTACTCACTGTCCAACCAGGTTATGGGCACTGCTTCACATGGGAAAAGGGATTTTTCAGAGACTGAATCTTGTGTTGCTAATAATGACAGTGATGATGAGAATAAGATTTCACCAGTTTCTAAAAGGAAAAAAGTCTCTGCAAGTAACCCAAATTTAGCTCAATTTCAAACTGAATTTATTGATTCCATTGTAGCGACCACATCTAGTGCAGAAGTTCCTATCAGTTTCAGTGATAGCCAAGAACATAAGAAAGACGATGTTGCATTGTCAAAAATGGGTATGGATATTCAGTTTAAGGCTCAGTCGATGCCTTATTCAGGTAATATTGCTAAATTATCTGACTGTATTTTCACTGGAGGATCATTTGAGTCTATGATTGCAAATGAGGAAACCAAGAGTTCTGAGCATTTGGAATTGCAGCACTCAGATATTGTTGCTACACAATGTGTGGACTTGGCCTTTCCAAATGTTCAGTTTTCAGTATTAGGGTGTGAGCAGAAAGACAGTGTTACTCCAGTTGTGCCTATAACTAACACTCAAACTACTGACATTTCGGTTATTGGGATTATCAAGGGAGTTAATACAGATTCGCGTGATGCTGAAAACAATTACCATTCTAGAGATGATTTGCAAAGGTCTCCAAGGGCTGATATGTTATCTAATGGTTTCAATATGAAGAATGATTCGCTTGTTCAGGAGAACCTAATGTCCTGTCCTGTCGCCCGGAATGGAGCCACCATCAGTCATTCAAATGATAAATTGATTGAGGATTTGCCCAATGCTTTATCAGATATATATTCTCATGGGACGACATCTGAATTACCCGATAGAATGATTACTGAATTTTCAGCAACCGATGATGATGAAAACATTTGCGGGGGTGAAGAAAATCCCAAAACTGAATCTACAGTCAAACATGGTTCTGACTCGGATACTTCTACTTCATCAAAACAGCATACCGAAAAAACTATGAAGTTAGATCACGTAATTGGATGTAGTGACCCAATAACAAGGAATATCACGCCAGAACCAACCCAAGTTTATTCCAAAGTTACACCCCTGGGCCTAAATTCATCTTGTTCTGAATTAAATGGAAGCAAAACTCAGCTTGATGGCGTCATCCTTAAAGCATCTCAGGGTTATTCTTTTACCTTTCCGAAGCCAAAAACAAAAACTCCTGCCTCTTCAATGCATGCTTTAAAATCTCGAACTTGGCATCGGACTGATAATAATAATCCTCCCGCTTCTCTACCTAGAGTCAAGCTTCCAGCCAGAATAGTTCCTCTCAAAAAGCCAATTCTCGAAAGGAAAAAGAACTTTCAAAATACTTCTTACATTCGTAAAGGTAACAGTCTTGTTAGGAATCCTACTCCAGTTTCTGCTATACCTCAAATCTCCTCTACCAGTCTCATGAGGAAACCTACTCCAGTTTCTGCTATACCTCAAATCTCCTCTACAAATTTGCTACCTTTGGGGTTAGGTGAAATACCTAAGGGCACCAAACCTGAAAGCAGGGCTGATTTGACAGATCCATCAATCTACTCAAAAACAAAAGTATCTAATATTGCTCTACCCATTGACACCAAATCAGAGGAAAATATATCTTTTCGGCTGCTAGAACCCCCTTCCAGTGGCTGCTGTGAAAATACAACTGATCTTAGGAAGTTTATTGAAAGTAATGATGCACCAGTCTCCTCTGGAGATGTATCAAAACAATACGAAGCTCTTGAAAAACAAACTGGTCCATCTAACAATGGGGAGTGTCAAGCTGAAGCAAATGATGGAAACATTTCTTCTTTGAACTCAAAAAGAATTGTTTATGTAAAGCCTAAAACAAATCAACTGGTTGCTACTTCGAGTTCTAGTGATATGATGGTCTCTACTGATGACAAAGGCCAAACAGCCTTCTCTGATAGGTATTTCAAAAGGAAAAAAAATCAATTGGTTAGGACTACGTTTGAAAACCACACAGTTTCAATGCCCAATAACATTGGGAATTCTGACGTCCAAGGAGCTAGTAGAGTATTTTGCAACAAGAGGTTTACCAAGAGACGGTCACATAAAGTTGCTGGGATGTCAAGTAAATCTTCAAGAGCCTCATTGGTGTGGACACTTGGTGGCAAAAATTCTTCTAGAAATGACAGGAACTCGTGGCATTATCAAAAGTTTCCATGGAAAAGAACAACATATTTAAGAAGCTTCATTCATAATTCTGCTTCAAGCTTCAATAGTGGTTCCTTATCTGCAGCCGGTAAGAAATTGCTTCTGTTGAGAAAGAGGGATACTGTATACACCAGGTCGACCCGTGGGTTTTCTCTTTGGAAATCCAAAGTTTTAGGCGTTGGTGGGTCTAGTTTAAAATGGTCAAAATCCATTGAGAAGCACTCAAAGAAAACTAATGAGGAAGCTACACTTGCTGTTGCTGCTGTTGAGAGGAAGAAGAGAGAAAAGAAAAATCCAGCTCGTGCGGGTTCTCAGACAAAGAGAGAACGTATTTTTCGTGTTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGCGGACACTTCAGAGGATTTCAGATGATGAGTCCCTGTCCTCTGCCTCAACCAGTTCAGGTTTGGTTTCTAAAAGAGGTTACATCCCAAGGAGATTAGTGATTGGAAATGATGAATATGTCACAATTGGCAATGGAAACCAACTTATCAGAGACCCAAAGAAACGAATTCGAAAACTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCACGTAAGCAGAAGTACTGCCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGATGGAGGGAAGTGTCCTTACATTCACGATCCCTCGAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTGCAAACTGCAAATTGACTCATAAGGTTCTTCCAGAGAGAATGCCCGATTGCTCATACTTTTTGCAAGGCTTATGCTCAAACAAAAGTTGTTCATATAGACATGTCAACGTGAACCCTAATGCATCTATTTGTGAAGGATTTCTTAAGGGTTATTGTGCTGACGGAAATGAGTGTCGGAAGAAGCACAGCTACGTCTGTCCTAGTTTTGAAGCAACCGGAACCTGTTCTCAAGGAACCAAATGCAAGCTTCACCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCCGGAGATCAGAACAACGATAGTGGACGTTACTTTGGTTCTATTTCTGCTGATGTTTCTGAACCTGGGTTGACAGTGGCTCCCAGCCATTCTCAAAAGAATGAAGAACATGAAGATGAACTAACCGACTACATCAGTCTTGATGTGTATGAAGAAGCGGCAGACATGGTTGACCAATCATCCGAGCTATCAACATTTTGTGACAACGATACCATGGATCTTCGGTTGGATACTTCTGATGAACTCATCAAACATATTTCTATAATACCGAAATTTGCTTTGCAATTTCAGTCTAGAAACCCGCAAGCTTAG 5430 0.398 MVVNGNVNSVVLHLRNRFKRRVLFLESRRGNNKDQHGGGYSKAEDRKKGSPVELDISFESNSLVAKAIVTPPPSTSGAAAAPVYGKLSSVVEILNDNNNTSQKNAGDACNPCDKRGVAVSVNPSGTGNRKLASKVVKKKKIVKRVVKKGSVNPTSSSALASPSLAKEVGGTVQAGSVTHDSSNAASENVKAETYLEEKINAVDKVSAPDSEKCEDKNGSLSLLSLGPEFRSQECKINEDSDIGKESRFERGGSISSAPSCASSSVDKNCGSDSDCLDVCNSVHDLLSVTKIDKPTKSLDGSTSELNHLDCGNKQLCRSEVSLSPGKYIDVGCSENRNPVDVGNELNSNVVSDDIINTHNSADDSVYGFNSNDLASSEEKKITVNDSENNNDIDAGAYCEKTGLAITTLEQNSDTAIRNELNSNVVSADIINSHNSADDSVYGFNSNNLTSSEENKITVNDSENINDIDAGAYCEKMGLAITTLEQNSDTAIPLPCGGMVASSSLGDIRIQDGQDCLQHTSVLNKGSDDGSSSLEESIVVHQFGIIKDAEKQVSPGEVPVYAENCDIDKTFPNSNISLGFEVRDTSKVEKRNVKTRLNFLSLDLDDISLTPVTHSNDADRGSRILLKDPCSSEVLDHSIQRLDFYSLSNQVMGTASHGKRDFSETESCVANNDSDDENKISPVSKRKKVSASNPNLAQFQTEFIDSIVATTSSAEVPISFSDSQEHKKDDVALSKMGMDIQFKAQSMPYSGNIAKLSDCIFTGGSFESMIANEETKSSEHLELQHSDIVATQCVDLAFPNVQFSVLGCEQKDSVTPVVPITNTQTTDISVIGIIKGVNTDSRDAENNYHSRDDLQRSPRADMLSNGFNMKNDSLVQENLMSCPVARNGATISHSNDKLIEDLPNALSDIYSHGTTSELPDRMITEFSATDDDENICGGEENPKTESTVKHGSDSDTSTSSKQHTEKTMKLDHVIGCSDPITRNITPEPTQVYSKVTPLGLNSSCSELNGSKTQLDGVILKASQGYSFTFPKPKTKTPASSMHALKSRTWHRTDNNNPPASLPRVKLPARIVPLKKPILERKKNFQNTSYIRKGNSLVRNPTPVSAIPQISSTSLMRKPTPVSAIPQISSTNLLPLGLGEIPKGTKPESRADLTDPSIYSKTKVSNIALPIDTKSEENISFRLLEPPSSGCCENTTDLRKFIESNDAPVSSGDVSKQYEALEKQTGPSNNGECQAEANDGNISSLNSKRIVYVKPKTNQLVATSSSSDMMVSTDDKGQTAFSDRYFKRKKNQLVRTTFENHTVSMPNNIGNSDVQGASRVFCNKRFTKRRSHKVAGMSSKSSRASLVWTLGGKNSSRNDRNSWHYQKFPWKRTTYLRSFIHNSASSFNSGSLSAAGKKLLLLRKRDTVYTRSTRGFSLWKSKVLGVGGSSLKWSKSIEKHSKKTNEEATLAVAAVERKKREKKNPARAGSQTKRERIFRVGSVRYRMDPSRRTLQRISDDESLSSASTSSGLVSKRGYIPRRLVIGNDEYVTIGNGNQLIRDPKKRIRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDGGKCPYIHDPSKIAVCTKFLNGLCSTANCKLTHKVLPERMPDCSYFLQGLCSNKSCSYRHVNVNPNASICEGFLKGYCADGNECRKKHSYVCPSFEATGTCSQGTKCKLHHPKKQSKGKKRKRSGDQNNDSGRYFGSISADVSEPGLTVAPSHSQKNEEHEDELTDYISLDVYEEAADMVDQSSELSTFCDNDTMDLRLDTSDELIKHISIIPKFALQFQSRNPQA 1809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04599 1809 MobiDBLite consensus disorder prediction 661 685 - -
Vivi4g04599 1809 Gene3D - 1648 1710 - -
Vivi4g04599 1809 MobiDBLite consensus disorder prediction 29 48 - -
Vivi4g04599 1809 MobiDBLite consensus disorder prediction 1690 1704 - -
Vivi4g04599 1809 Gene3D - 1593 1647 - -
Vivi4g04599 1809 PANTHER CCCH ZINGC FINGER 33 1795 - -
Vivi4g04599 1809 ProSiteProfiles Zinc finger C3H1-type profile. 1620 1646 IPR000571 GO:0046872
Vivi4g04599 1809 FunFam Zinc finger CCCH domain-containing protein 7 1648 1709 - -
Vivi4g04599 1809 MobiDBLite consensus disorder prediction 930 965 - -
Vivi4g04599 1809 ProSiteProfiles Zinc finger C3H1-type profile. 1565 1594 IPR000571 GO:0046872
Vivi4g04599 1809 SMART c3hfinal6 1674 1696 IPR000571 GO:0046872
Vivi4g04599 1809 SMART c3hfinal6 1594 1618 IPR000571 GO:0046872
Vivi4g04599 1809 SMART c3hfinal6 1647 1673 IPR000571 GO:0046872
Vivi4g04599 1809 SMART c3hfinal6 1620 1645 IPR000571 GO:0046872
Vivi4g04599 1809 SMART c3hfinal6 1565 1593 IPR000571 GO:0046872
Vivi4g04599 1809 MobiDBLite consensus disorder prediction 1683 1746 - -
Vivi4g04599 1809 ProSiteProfiles Zinc finger C3H1-type profile. 1669 1697 IPR000571 GO:0046872
Vivi4g04599 1809 MobiDBLite consensus disorder prediction 240 264 - -
Vivi4g04599 1809 MobiDBLite consensus disorder prediction 935 949 - -
Vivi4g04599 1809 FunFam zinc finger CCCH domain-containing protein 3 1595 1646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04599 Vivi-Chr4 173941552 173950402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04599 1571 1700 C2H2 Transcription Factor Family AT2G32930 32.593 6.38e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi4g04599 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04599 - - vvo:131596007 3452.91