Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04598 ATGGATCAACACTTCCTCCACCACTACAACCACCAAGAACACCGTTCACGATACGCTCCTCCAAATTCTCAATCGCATCACCACCTCCCTCCACCACCCGCTCTTCCACCTCCTCCACCTCTCTCTTACCGCTCTGTCGATACCCTTCCTCCTCCACCCCCGCCCCCATCTTACAACCCTCCCCGATTCCCTTTTTACCCCATCGAAGAACCACGCACTCTCTCAAACTCATTCACCAATCGTAACGATCATCTCCCCCGCCGTATCGTCCCCGAACCCCCGTGGAACCCTAACCCCGAAGATCGCTCCACCAGAAGTTATCCTCCCGTCGATTTCCATCGCGAATCGAATCACCACCATAACCACCGTCCTCCGCCTTCATATCCACCTGTCCGATACGAATCTGAGAGCTCTTACGGGAGGTTAAGCACAGAAACCTCCCGCCTAGTAGGAAGCCCTAGGGAAGCCTTCGTCTACAGCAGAACCACCAACGACGATAGCTACCATCGCCACGGAACGGCCACATCCACCTCCACATCGAATCACGCCTATCACCCAATCAATGACGTATCCCCCAGGAGGTGGTTGAATGATAGAAAAGTACACAACTCTTCTCCTCCACATTCTCCTTCTTTTGAATTGGTGAATGATGAAATTGGTACTTCTGTGAAACGAGAACGAGAGTATCATGATTCTGATTCGGTTAGGTATAGTAATGGTAGCAATAGTGGTAGATCGAGTAGTAGAGAGTATAATCATAATCATGGTCGTGAACGGGAACGTGAATTCAGTCGTACTCCACCTAAGAAACAGATTCAAAAGAAGAGTGCTCTTCTTAGAATCCAGACGGTAAAACCAAACCATAGGAACCGTGACATTGAACAGTTACGTTATGTTTCTGATTCTAACAATAATTTCTTCAGGGGTAACAATAAAGATCAACATGGAGGAGGTTACTCAAAGGCTGAGGATAGGAAAAAAGGAAGCCCAGTTGAACTTGACATTTCTTTTGAATCAAACTCTCTTGTGGCCAAGGCTATTGTCACACCCCCACCTTCCACTTCTGGTGCCGCCGCTGCTCCTGTTTATGGTAAACTGTCTTCTGTTGTTGAAATTTTGAATGATAATAATAATACTTCGCAGAAGAATGCAGGTGATGCTTGTAATCCTTGTGACAAACGTGGGGTGGCAGTTTCTGTTAATCCTAGTGGCACTGGTAATCGGAAATTGGCCTCTAAGGTTGTCAAGAAGAAGAAAATTGTTAAGAGAGTGGTGAAGAAAGGTTCCGTAAATCCTACTAGTTCAAGCGCGCTGGCTTCACCTTCTCTCGCCAAAGAAGTTGGTGGAACTGTGCAAGCAGGTAGTGTAACACACGACTCGTCCAATGCTGCCTCTGAAAATGTCAAAGCTGAAACTTATTTGGAGGAGAAAATCAATGCTGTTGATAAGGTGTCCGCGCCAGACAGTGAAAAGTGTGAAGATAAAAATGGGAGTTTGTCCCTGCTGAGTCTGGGGCCAGAATTCAGATCACAAGAATGTAAGATCAATGAAGATTCTGATATTGGGAAAGAATCCAGGTTTGAAAGAGGTGGAAGTATCTCAAGCGCTCCATCTTGTGCTTCTAGTAGTGTAGATAAAAACTGTGGTTCTGATAGTGATTGTTTAGATGTGTGTAATTCTGTCCATGACTTGCTTAGCGTGACAAAAATTGACAAACCTACTAAGTCATTAGATGGAAGCACTTCTGAACTCAATCACTTGGATTGTGGGAACAAGCAATTATGTCGGAGTGAAGTATCTCTATCACCTGGGAAGTATATAGATGTTGGATGTTCAGAGAATAGGAATCCTGTAGACGTAGGGAATGAATTGAATTCCAATGTCGTTTCAGATGATATTATAAATACACATAATTCTGCTGATGACAGCGTTTATGGCTTCAATTCCAACGATCTTGCAAGTTCAGAAGAGAAGAAAATTACTGTCAATGATAGTGAGAATAATAATGACATTGATGCAGGGGCTTATTGTGAAAAGACTGGTCTTGCTATCACTACATTGGAACAAAATTCAGATACAGCCATAAGGAATGAATTGAATTCCAATGTCGTTTCAGCTGATATTATAAATTCACATAATTCTGCTGATGACAGCGTTTACGGCTTCAATTCTAACAATCTTACAAGTTCAGAAGAGAATAAAATTACTGTCAATGATAGTGAGAATATCAATGACATTGATGCAGGGGCTTATTGTGAAAAGATGGGTCTTGCTATCACTACATTGGAACAAAATTCAGATACAGCCATCCCTCTGCCATGCGGTGGAATGGTTGCCTCTTCAAGTTTAGGAGATATTAGGATTCAGGATGGTCAAGATTGCCTACAACATACCAGTGTACTGAACAAGGGTTCTGATGATGGATCGTCTAGTTTAGAAGAGAGTATTGTTGTTCACCAATTTGGTATAATTAAAGATGCTGAAAAGCAAGTGTCCCCTGGTGAAGTTCCCGTATATGCTGAGAATTGCGACATAGATAAAACATTTCCAAATTCTAATATTTCACTTGGATTTGAAGTAAGGGATACAAGTAAAGTAGAAAAGAGAAATGTTAAGACTCGTTTAAATTTTTTGAGTTTGGATTTGGATGATATATCTCTTACTCCAGTTACCCATTCAAATGATGCTGATAGAGGCTCAAGAATTTTATTGAAGGATCCATGTTCTTCAGAAGTCCTAGATCATTCTATTCAAAGGCTAGACTTTTACTCACTGTCCAACCAGGTTATGGGCACTGCTTCACATGGGAAAAGGGATTTTTCAGAGACTGAATCTTGTGTTGCTAATAATGACAGTGATGATGAGAATAAGATTTCACCAGTTTCTAAAAGGAAAAAAGTCTCTGCAAGTAACCCAAATTTAGCTCAATTTCAAACTGAATTTATTGATTCCATTGTAGCGACCACATCTAGTGCAGAAGTTCCTATCAGTTTCAGTGATAGCCAAGAACATAAGAAAGACGATGTTGCATTGTCAAAAATGGGTATGGATATTCAGTTTAAGGCTCAGTCGATGCCTTATTCAGGTAATATTGCTAAATTATCTGACTGTATTTTCACTGGAGGATCATTTGAGTCTATGATTGCAAATGAGGAAACCAAGAGTTCTGAGCATTTGGAATTGCAGCACTCAGATATTGTTGCTACACAATGTGTGGACTTGGCCTTTCCAAATGTTCAGTTTTCAGTATTAGGGTGTGAGCAGAAAGACAGTGTTACTCCAGTTGTGCCTATAACTAACACTCAAACTACTGACATTTCGGTTATTGGGATTATCAAGGGAGTTAATACAGATTCGCGTGATGCTGAAAACAATTACCATTCTAGAGATGATTTGCAAAGGTCTCCAAGGGCTGATATGTTATCTAATGGTTTCAATATGAAGAATGATTCGCTTGTTCAGGAGAACCTAATGTCCTGTCCTGTCGCCCGGAATGGAGCCACCATCAGTCATTCAAATGATAAATTGATTGAGGATTTGCCCAATGCTTTATCAGATATATATTCTCATGGGACGACATCTGAATTACCCGATAGAATGATTACTGAATTTTCAGCAACCGATGATGATGAAAACATTTGCGGGGGTGAAGAAAATCCCAAAACTGAATCTACAGTCAAACATGGTTCTGACTCGGATACTTCTACTTCATCAAAACAGCATACCGAAAAAACTATGAAGTTAGATCACGTAATTGGATGTAGTGACCCAATAACAAGGAATATCACGCCAGAACCAACCCAAGTTTATTCCAAAGTTACACCCCTGGGCCTAAATTCATCTTGTTCTGAATTAAATGGAAGCAAAACTCAGCTTGATGGCGTCATCCTTAAAGCATCTCAGGGTTATTCTTTTACCTTTCCGAAGCCAAAAACAAAAACTCCTGCCTCTTCAATGCATGCTTTAAAATCTCGAACTTGGCATCGGACTGATAATAATAATCCTCCCGCTTCTCTACCTAGAGTCAAGCTTCCAGCCAGAATAGTTCCTCTCAAAAAGCCAATTCTCGAAAGGAAAAAGAACTTTCAAAATACTTCTTACATTCGTAAAGGTAACAGTCTTGTTAGGAATCCTACTCCAGTTTCTGCTATACCTCAAATCTCCTCTACCAGTCTCATGAGGAAACCTACTCCAGTTTCTGCTATACCTCAAATCTCCTCTACAAATTTGCTACCTTTGGGGTTAGGTGAAATACCTAAGGGCACCAAACCTGAAAGCAGGGCTGATTTGACAGATCCATCAATCTACTCAAAAACAAAAGTATCTAATATTGCTCTACCCATTGACACCAAATCAGAGGAAAATATATCTTTTCGGCTGCTAGAACCCCCTTCCAGTGGCTGCTGTGAAAATACAACTGATCTTAGGAAGTTTATTGAAAGTAATGATGCACCAGTCTCCTCTGGAGATGTATCAAAACAATACGAAGCTCTTGAAAAACAAACTGGTCCATCTAACAATGGGGAGTGTCAAGCTGAAGCAAATGATGGAAACATTTCTTCTTTGAACTCAAAAAGAATTGTTTATGTAAAGCCTAAAACAAATCAACTGGTTGCTACTTCGAGTTCTAGTGATATGATGGTCTCTACTGATGACAAAGGCCAAACAGCCTTCTCTGATAGGTATTTCAAAAGGAAAAAAAATCAATTGGTTAGGACTACGTTTGAAAACCACACAGTTTCAATGCCCAATAACATTGGGAATTCTGACGTCCAAGGAGCTAGTAGAGTATTTTGCAACAAGAGGTTTACCAAGAGACGGTCACATAAAGTTGCTGGGATGTCAAGTAAATCTTCAAGAGCCTCATTGGTGTGGACACTTGGTGGCAAAAATTCTTCTAGAAATGACAGGAACTCGTGGCATTATCAAAAGTTTCCATGGAAAAGAACAACATATTTAAGAAGCTTCATTCATAATTCTGCTTCAAGCTTCAATAGTGGTTCCTTATCTGCAGCCGGTAAGAAATTGCTTCTGTTGAGAAAGAGGGATACTGTATACACCAGGTCGACCCGTGGGTTTTCTCTTTGGAAATCCAAAGTTTTAGGCGTTGGTGGGTCTAGTTTAAAATGGTCAAAATCCATTGAGAAGCACTCAAAGAAAACTAATGAGGAAGCTACACTTGCTGTTGCTGCTGTTGAGAGGAAGAAGAGAGAAAAGAAAAATCCAGCTCGTGCGGGTTCTCAGACAAAGAGAGAACGTATTTTTCGTGTTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGCGGACACTTCAGAGGATTTCAGATGATGAGTCCCTGTCCTCTGCCTCAACCAGTTCAGGTTTGGTTTCTAAAAGAGGTTACATCCCAAGGAGATTAGTGATTGGAAATGATGAATATGTCACAATTGGCAATGGAAACCAACTTATCAGAGACCCAAAGAAACGAATTCGAAAACTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCACGTAAGCAGAAGTACTGCCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGATGGAGGGAAGTGTCCTTACATTCACGATCCCTCGAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTGCAAACTGCAAATTGACTCATAAGGTTCTTCCAGAGAGAATGCCCGATTGCTCATACTTTTTGCAAGGCTTATGCTCAAACAAAAGTTGTTCATATAGACATGTCAACGTGAACCCTAATGCATCTATTTGTGAAGGATTTCTTAAGGGTTATTGTGCTGACGGAAATGAGTGTCGGAAGAAGCACAGCTACGTCTGTCCTAGTTTTGAAGCAACCGGAACCTGTTCTCAAGGAACCAAATGCAAGCTTCACCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCCGGAGATCAGAACAACGATAGTGGACGTTACTTTGGTTCTATTTCTGCTGATGTTTCTGAACCTGGGTTGACAGTGGCTCCCAGCCATTCTCAAAAGAATGAAGAACATGAAGATGAACTAACCGACTACATCAGTCTTGATGTGTATGAAGAAGCGGCAGACATGGTTGACCAATCATCCGAGCTATCAACATTTTGTGACAACGATACCATGGATCTTCGGTTGGATACTTCTGATGAACTCATCAAACATATTTCTATAATACCGAAATTTGCTTTGCAATTTCAGTCTAGAAACCCGCAAGCTTAG 6267 0.4107 MDQHFLHHYNHQEHRSRYAPPNSQSHHHLPPPPALPPPPPLSYRSVDTLPPPPPPPSYNPPRFPFYPIEEPRTLSNSFTNRNDHLPRRIVPEPPWNPNPEDRSTRSYPPVDFHRESNHHHNHRPPPSYPPVRYESESSYGRLSTETSRLVGSPREAFVYSRTTNDDSYHRHGTATSTSTSNHAYHPINDVSPRRWLNDRKVHNSSPPHSPSFELVNDEIGTSVKREREYHDSDSVRYSNGSNSGRSSSREYNHNHGREREREFSRTPPKKQIQKKSALLRIQTVKPNHRNRDIEQLRYVSDSNNNFFRGNNKDQHGGGYSKAEDRKKGSPVELDISFESNSLVAKAIVTPPPSTSGAAAAPVYGKLSSVVEILNDNNNTSQKNAGDACNPCDKRGVAVSVNPSGTGNRKLASKVVKKKKIVKRVVKKGSVNPTSSSALASPSLAKEVGGTVQAGSVTHDSSNAASENVKAETYLEEKINAVDKVSAPDSEKCEDKNGSLSLLSLGPEFRSQECKINEDSDIGKESRFERGGSISSAPSCASSSVDKNCGSDSDCLDVCNSVHDLLSVTKIDKPTKSLDGSTSELNHLDCGNKQLCRSEVSLSPGKYIDVGCSENRNPVDVGNELNSNVVSDDIINTHNSADDSVYGFNSNDLASSEEKKITVNDSENNNDIDAGAYCEKTGLAITTLEQNSDTAIRNELNSNVVSADIINSHNSADDSVYGFNSNNLTSSEENKITVNDSENINDIDAGAYCEKMGLAITTLEQNSDTAIPLPCGGMVASSSLGDIRIQDGQDCLQHTSVLNKGSDDGSSSLEESIVVHQFGIIKDAEKQVSPGEVPVYAENCDIDKTFPNSNISLGFEVRDTSKVEKRNVKTRLNFLSLDLDDISLTPVTHSNDADRGSRILLKDPCSSEVLDHSIQRLDFYSLSNQVMGTASHGKRDFSETESCVANNDSDDENKISPVSKRKKVSASNPNLAQFQTEFIDSIVATTSSAEVPISFSDSQEHKKDDVALSKMGMDIQFKAQSMPYSGNIAKLSDCIFTGGSFESMIANEETKSSEHLELQHSDIVATQCVDLAFPNVQFSVLGCEQKDSVTPVVPITNTQTTDISVIGIIKGVNTDSRDAENNYHSRDDLQRSPRADMLSNGFNMKNDSLVQENLMSCPVARNGATISHSNDKLIEDLPNALSDIYSHGTTSELPDRMITEFSATDDDENICGGEENPKTESTVKHGSDSDTSTSSKQHTEKTMKLDHVIGCSDPITRNITPEPTQVYSKVTPLGLNSSCSELNGSKTQLDGVILKASQGYSFTFPKPKTKTPASSMHALKSRTWHRTDNNNPPASLPRVKLPARIVPLKKPILERKKNFQNTSYIRKGNSLVRNPTPVSAIPQISSTSLMRKPTPVSAIPQISSTNLLPLGLGEIPKGTKPESRADLTDPSIYSKTKVSNIALPIDTKSEENISFRLLEPPSSGCCENTTDLRKFIESNDAPVSSGDVSKQYEALEKQTGPSNNGECQAEANDGNISSLNSKRIVYVKPKTNQLVATSSSSDMMVSTDDKGQTAFSDRYFKRKKNQLVRTTFENHTVSMPNNIGNSDVQGASRVFCNKRFTKRRSHKVAGMSSKSSRASLVWTLGGKNSSRNDRNSWHYQKFPWKRTTYLRSFIHNSASSFNSGSLSAAGKKLLLLRKRDTVYTRSTRGFSLWKSKVLGVGGSSLKWSKSIEKHSKKTNEEATLAVAAVERKKREKKNPARAGSQTKRERIFRVGSVRYRMDPSRRTLQRISDDESLSSASTSSGLVSKRGYIPRRLVIGNDEYVTIGNGNQLIRDPKKRIRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDGGKCPYIHDPSKIAVCTKFLNGLCSTANCKLTHKVLPERMPDCSYFLQGLCSNKSCSYRHVNVNPNASICEGFLKGYCADGNECRKKHSYVCPSFEATGTCSQGTKCKLHHPKKQSKGKKRKRSGDQNNDSGRYFGSISADVSEPGLTVAPSHSQKNEEHEDELTDYISLDVYEEAADMVDQSSELSTFCDNDTMDLRLDTSDELIKHISIIPKFALQFQSRNPQA 2088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04598 2088 Gene3D - 1927 1989 - -
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 1 15 - -
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 106 122 - -
Vivi4g04598 2088 SMART c3hfinal6 1899 1924 IPR000571 GO:0046872
Vivi4g04598 2088 SMART c3hfinal6 1844 1872 IPR000571 GO:0046872
Vivi4g04598 2088 SMART c3hfinal6 1873 1897 IPR000571 GO:0046872
Vivi4g04598 2088 SMART c3hfinal6 1926 1952 IPR000571 GO:0046872
Vivi4g04598 2088 SMART c3hfinal6 1953 1975 IPR000571 GO:0046872
Vivi4g04598 2088 ProSiteProfiles Zinc finger C3H1-type profile. 1844 1873 IPR000571 GO:0046872
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 1208 1244 - -
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 25 67 - -
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 157 186 - -
Vivi4g04598 2088 PANTHER CCCH ZINGC FINGER 259 2074 - -
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 1969 1983 - -
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 226 276 - -
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 940 964 - -
Vivi4g04598 2088 Gene3D - 1871 1926 - -
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 235 249 - -
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 1 190 - -
Vivi4g04598 2088 ProSiteProfiles Zinc finger C3H1-type profile. 1899 1925 IPR000571 GO:0046872
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 519 542 - -
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 250 269 - -
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 197 216 - -
Vivi4g04598 2088 FunFam Zinc finger CCCH domain-containing protein 7 1927 1988 - -
Vivi4g04598 2088 ProSiteProfiles Zinc finger C3H1-type profile. 1948 1976 IPR000571 GO:0046872
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 1962 2025 - -
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 304 327 - -
Vivi4g04598 2088 MobiDBLite consensus disorder prediction 1214 1228 - -
Vivi4g04598 2088 FunFam zinc finger CCCH domain-containing protein 3 1874 1925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04598 Vivi-Chr4 173941552 173951320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04598 1850 1979 C2H2 Transcription Factor Family AT2G32930 32.593 1.20e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi4g04598 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04598 4 173941552 173951320 Vivi4g04598 4 173941552 173951320 ECH