Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04590 ATGTCAAAGTCTCCCTCTCCTGAACAACAGAGATCCGTTTATTCTGATTCTCAGCCCATGGAATACAATGGGGAAACAGGAACGGACGATGCCGAATCTACAATGGGATCAGTTGCTAATTTTTTGGAGCAACTGCATGCCAACATGTCTTCACCACTTGAGCAAGAACTTATTACAGCACAATTACTAGTTGTTGCCAGGAGAAGGAAGGATGCTAGAGCACTTATCGGTTCTCATGCCCAAGCAATGCCGTTGTTCATAAGCATTCTCAGAAATGGAACCCCTCTAGCAAAATTTAATGTAGCTTCCATTCTAAGTTTCCTGTGCAAAGATGAAGACTTGAGGTTAAGAGTACTTCTTGGGGGTTGTATCCCACCATTACTGGCAGTTTTAATATATGAATCCACTGATGCTAGAAAGGCAGCAGCTGAAGCAATATATGAAGTTTCCTCTGGTGGTCTTTCAGATGATCATGTTGGTATGAAAATTTTTGTTACAGAAGGTGTAGTTCCAACCTTATGGAATCAACTAAATCCAAAGAACAAGGAAGACAAAGTTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTATGTGGGGACAAAGATGTTTATTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATCATTGGGGGTCTCTTGTCTTCAGACAATTCTGTTTCTCAGTCAAATGCAGCTTCCCTGTTGGCACGTTTAATGCTGGCCTTTAGTGATAGCATCCCTAAAGTAATAGACTCTGGAGCAGTCAAAGCTTTACTTCGACTTATTGGTCAGGAAAATGATATTTCTGTACGAGCCAGTGCTGCTGATGCCCTAGAGGCCCTTTCTTCAAAGTCTGCCAAGGCTAAAAAAGCTATTGTTAATGCTGACGGTGTTCCGATCCTTATTGGAGCTATTGTTGCTCCTTCTACAGAGTGTATGCGAGGCGATGGTGGTCAGGCCTTGCAAGAGCATGCAACTCGAGCTTTAGCTAACATCTACGGGGGCATGTCTGCTTTAATACTATATCTTGGAGGGCTTTCTCATTCTCCCCACCTTGCTGCACCAGTTGGTGATATAATTGGTGCTCTTGCTTATACACTCATGGTCTTTGTGGAAAACCGTGACGTTGATGAGGAACATTTTGATGCAACTCAGGTAGAGGATAATCTAGTAACTCTCTTAAAGACTAGAGACAACAAGCTGATTCAAGAACGTGTCCTTGAGGCCATGGCCAGCCTTTATGGAAACGAATATCTCTCAAAGTGGCTTGTTCAAGCAGATTCAAAAAAGGTTCTCATTGGACTTATAACTATGGCTGCTCCTGATGTGCAAGATAATCTGATACTATCATTGACAAGATTGTGTTGTGAAAGGATTGGAATATGGGAGGCCATTAAAAAACGAGAAGGTATTCAGTTGCTGATATCATTGGTGGGATTATCTAGTGAGCAGCATCAAGAGTATTCAGTTCAATTGTTAGCGATCTTAACTCAGCAGGTTGATGACAGCAAATGGGCAATCACTGCTGCTGGAGGTATTCCACCATTGGTACAGTTGTTGGAGACTGGATCACAAAAAGCAAGAGAGGAAGCGGCTAATGTTCTTTGGAGTTTGTGCTGCCACAGTGAAGATATCCGTGCCTGTGTTGAAAGTGCTGGAGCTGTACCAGCATTTTTGTGGCTTCTCAAGAGTGGTGGATCAAAAGGACAAGAAGCTTCTGCCAAGGCACTCACAAAGCTTGTCCGAGTAGCTGATTCGGCCACTATTAACCAGCTATTAGCATTGCTCCTTGGGGATTCTACAAGCTCAAAAGCCCATATAGTTCAGGTATTAGGTCATGTGCTTTCTATTGCTTCACAGAAGGATCTCCTTCAAAAGGGATCTGCTGCTTATAAAGGACTGAGATCTCTTGTTCAAGTTCTCAATTCATCAAATGTGGAAACCCAAGAGTATGCAGCTTCAGTCCTTGCTGATTTATTTGTCACAAGACAAGACATTTGTGATAGTCTTGCAACGGATGAGATTGTGCTTCCTTGCTTGAAGCTTTTGAGTAGCAAAAGTCAAGGTGTTGCCACTCAGTCTGCTCGAGCTTTATGTGCTCTGTCTCGTCCAACCAAGAGCAAAGCTGCAAATATGATGTCTTATATTGTAGAGGGCGACGTTGAGCCGCTAATCAAATTAGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCATTAGCGAATCTTCTTTTTGATCCTTTTATTGCTGCTGAAGCCCTTGCTGAAGATGTTGTTTCAGCTTTGACAAGAGTTCTGGAAGAAGGAACCTCGGAAGGTAAACAAAATGCATCACGTGCACTTCATGAATTACTGAAGCAGTTTCCAGTAGGTGACGTTCTGAAGGGGAATGCTCAATGCCGTTTCACTGTGCTTGCACTTGTTGATTCATTAAGAGCTGTGGATATGGATGGAACTGATGTAGCAGATACTTTAGGAGCAATTGCACTGCTAGTCAGAACTAAGCAAGGTGTCAACTTCCCTTACCCTCTATGGTTAGCTCTGACTGAAATACCATCAAGCTTAGAACTTCTCATCTCCTGTTTGGCTGAGGGGCCTCCCCCTGTGCAAGACAAGGCAATTGAAATTCTGTCTAGGCTTTGTGGGGATCAGCCAGCTGTTCTAGGTGATTTTTTGTTTGCTAATTTGAGATCCATTGTTTCGTTGGCTGGTAGAATAATAAACTCCTCCAGTTCAGAAGTAAAAGTTGGTGGAGCTTCCATACTAATTTGTGCTGCAAAGAAGACGAAAGAGATTTCAATGGATTCACTTGACTCTTCTGGTTATTTAAAACCACTAATATATTCCTTAGTTGATATGGTAAAACAGAGTTGTAGCTATTCTTCATTAGATATTGAAGTATTCACCTCTAAAGGTTTTATGGAGAGAAATGCATTTCAAGAAGTTGATGTGTTTGATATTCTTGATCCTGCTGTAGTCTTGGGAGGTACTGTTGCCCTGTGGTTGCTCTCAATTATTGTTTCTTTTCATTCGAAAAGCAAGCACACAGTTATGGAAGCTGGTGGACTTGAAGCTCTCTGTAACAAACTTGCAAGACATACTTCAAACCCACAGGCAGAATATGAGGATACCGAAGGAATATGGATCAGTACCTTGTTCTTGGCAATTTTATTTAAAGATTCAAACATCATTCTATCACCTGCAACAATGAACATTATACCTTCTATCGCTCTTTTGCTAAGATCCGAAGAAGTAATTGATAAATATTTTGCTGCCCAGGCCATGGCTAGTCTTGTTTGTAATGGTAATAGGGGGATAAATCTTGTCATTGCAAATTCTGGTGCTGTTGCTGGATTGATAACTATGATTGGGCATATTGAGTCGGATATGCCAAATCTTGTGGCTTTATCAGAAGAATTTTCTTTGGTGCGAAACCCTGAACAAGTTGTTTTGGATACCCTTTTTGAAATTGAAGATGTAAGATTGGGATCTACTGCACGGAAATCGATACCCCTCTTAGTGGACCTCTTAAGACCAATACCTGAAAGGCCTAATGCTCCACCAGTTGCTGTTAGGCTCTTGATATCTATTGCAGATGGAAGTGATACAAATAAATCTATTCTGGCAGAAGCCGGAGCTCTGGAAGCCTTGAACAAATACCTGTCCTTGAGCCCTCAAGACTCAACTGAGACTGCTATTTCAGAGTTACTGAGAATTTTATTTTGTAACTCTGACCTAATTAATCATGAAGCATCAACAAGTTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAGTGCAGCAAAAGCACTTCATGAACTCTTTGATGCCGACTCTATCAGAGATTCAGAATTAGCTAAACAGGCCATTCAGCCATTGGTAGACATGCTTAACACAACATCAGGAAGTGAGCAAGAAGCTGCTCTCATGGCCTTGATCAAGTTAACGTCAGGAGATTCGTCAAAAGCATATATTTTTTCTGATGTGGAAGGGAATCCACTTGAAGGTTTATGTAAAGTATTGTCTTCTGCTTCTTCTTTGGAACTGAAGAGCCATGCTGCACATCTCTGCTATATTCTTTTTGCTAATAGTAAAATCAGAGCAAGCCCAGTTGCCTCAGAATGCATAGAACCCCTTATATCACTAATGCAGTCTGGTTCTGAGACAGCAATAGAATATGGGGTTTGTGCTTTTGATAGATTATTGGAAGATGAACAACAAGTAGAGCTTGCAGCAGCCTATAATGTTGTGGATCTCCTTGTCAGTTTGATTTCTGGTGTGAACTACCAGCTTATTGAGGCCACTATATCTACTCTAATTAAATTGGCTAAAGACAGGACTCCTAGCAAACATGACATGGTCAAAGCTGGCATTATTGATAATTGTCTCAAGCTATTTCAATCAGCACCTAGCTTGTTATGTTCTACAATCGCTGAGCTTTTTCTCATTTTAACCAACAGTACTGCAATTGCTAGAAGTTCAGATGCTGCAGAAATTGTAGAACCCCTTTTCAATGTTTTGCTCCGTCGCGATTTCAATTTATGGGGACAGCATAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAACCACAAAGTCTTGCATCCTTAAAGCTTACTCCTAGCCAAGTCATTGAGCCCTTAATTTCTTTTCTGGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACCGAACTATTATCTCATCTTCTTGCACAGGAACACTTTCAGCAAGATATTAAAACAAAGAATGCAGTTGTGCCTCTTGTACGGCTTGCAGGAATTGGAATTTTAAATTTACAGCAAACAGCAATAAAAGCATTGGAAAAAATTTCCAAGAGCTGGCCAAAGGTTGTTGCTGACGCGAAAGGTATTTTTGAGCTTTCAAAAGTTATTGTTCAAGATGATCCTCAGCCATCACCTGCACTCTGGGAATCAACTGCTTTAGTTCTCTCAAATGTATTAAGTTCCAATGCTGAATACTATTTTAAAGTTTCTGTGGTGGTTCTTGTAAAACTCTTGCACTCAACACTTGAGAGTACAATCAGCATAGCGCTAAATGCTTTAATAGTTTATGAAAGAAACTGTGCTTCAAGTGCTGAAGAGATGATGGAAGCAGGAGCTATGGATGCTCTGTTGCACCTCATAACATCCCATCTGTGTGAAGAAGCATCTGGTAGATTACTTGAAACTTTATTTAACAATGTGAGAGTACGGGAAATGAAGGTATCTAAGTATGCTATAGCGCCTTTATCCCAATATCTGTTAGATCCACAAACCAAATCACAGTCGGGCAAGCTTCTTGTTGCTTTAGCTCTGGGAAATCTTTCCCAGCATGAACGACATGCTAGAGCTGGTGACTCTGTATCTGCATGTCGTGCATTGATAAGCTTACTTGAAGATCAGCCAACTGAAGAAATGACGATGGTGGCTATATGCGCGTTGCAAAACTTTGTCATGAAGAGCAGGACCAATAGACGTGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAGGAATTGCTACTGTTTCCAAATACAGAAGTTGCCGGACAAGCTGCTCTATTGATCAAATTTTTGTTTTCTACCCACACATTACAAGAATATGTGTCAAATGAGCTGATCAGATCTTTGACAGCTGCACTCGAAAGGGAGTTGTGGTCGACTGCCACAATCAATGAGGAGGTTTTGAAAACACTGCATGTGATATTCATTAACTTTCCTAAGCTCCACATATCTGAAGCAGCGACCCTTTGCATTCCTCATTTGGTAGGGGCACTTAAATCTGGTGGTGAAGTGGCTCAAGACTCTGTACTTGACACATTTTTCTTGCTAAAAGAATCATGGTCAACCATGCCATTAGATATAGCAAAATCTCAAGCCATGATTGCCGCAGAAGCCATTCCCATATTGCAAATGCTCATGAAAACCTGCCCACCAAGTTTCCATGAGAGGGCGGATACTCTTCTGCACTGCTTACCAGGTTGTTTGACTGTGACCATTAAACGTGGAATTAACCTCAAGCAAACTATGGGAAGCACTAATGCATTTTGCCAGTTGACAATAGGCAATGGCCCTCCGAAACAAACCAAGGTTGTGAACCATAGTACTTCTCCGGAATGGAAAGAAGGATTCACATGGGCATTTGAAGTACCTCCCAAGGGCCAAAAGCTCCATATCATATGCAAAAGCAAGAATACTTTTGGAAAGACAAGTCTTGGAAGAGTCACTATCCAAATTGATAAGGTTGTGACAGAAGGGGTTTATAGTGGATTATTCAGTCTTAATCATGACAACAACAAAGATGGTTCTTCCCGAACACTTGAAATTGAGATTATATGGTCCAACAGAATTTCTAACGATGACATTTGA 6408 0.4128 MSKSPSPEQQRSVYSDSQPMEYNGETGTDDAESTMGSVANFLEQLHANMSSPLEQELITAQLLVVARRRKDARALIGSHAQAMPLFISILRNGTPLAKFNVASILSFLCKDEDLRLRVLLGGCIPPLLAVLIYESTDARKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWNQLNPKNKEDKVVEGFITGALRNLCGDKDVYWKATLEAGGVDIIGGLLSSDNSVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLRLIGQENDISVRASAADALEALSSKSAKAKKAIVNADGVPILIGAIVAPSTECMRGDGGQALQEHATRALANIYGGMSALILYLGGLSHSPHLAAPVGDIIGALAYTLMVFVENRDVDEEHFDATQVEDNLVTLLKTRDNKLIQERVLEAMASLYGNEYLSKWLVQADSKKVLIGLITMAAPDVQDNLILSLTRLCCERIGIWEAIKKREGIQLLISLVGLSSEQHQEYSVQLLAILTQQVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAVPAFLWLLKSGGSKGQEASAKALTKLVRVADSATINQLLALLLGDSTSSKAHIVQVLGHVLSIASQKDLLQKGSAAYKGLRSLVQVLNSSNVETQEYAASVLADLFVTRQDICDSLATDEIVLPCLKLLSSKSQGVATQSARALCALSRPTKSKAANMMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAEDVVSALTRVLEEGTSEGKQNASRALHELLKQFPVGDVLKGNAQCRFTVLALVDSLRAVDMDGTDVADTLGAIALLVRTKQGVNFPYPLWLALTEIPSSLELLISCLAEGPPPVQDKAIEILSRLCGDQPAVLGDFLFANLRSIVSLAGRIINSSSSEVKVGGASILICAAKKTKEISMDSLDSSGYLKPLIYSLVDMVKQSCSYSSLDIEVFTSKGFMERNAFQEVDVFDILDPAVVLGGTVALWLLSIIVSFHSKSKHTVMEAGGLEALCNKLARHTSNPQAEYEDTEGIWISTLFLAILFKDSNIILSPATMNIIPSIALLLRSEEVIDKYFAAQAMASLVCNGNRGINLVIANSGAVAGLITMIGHIESDMPNLVALSEEFSLVRNPEQVVLDTLFEIEDVRLGSTARKSIPLLVDLLRPIPERPNAPPVAVRLLISIADGSDTNKSILAEAGALEALNKYLSLSPQDSTETAISELLRILFCNSDLINHEASTSSLNQLIAVLRLGSRNARYSAAKALHELFDADSIRDSELAKQAIQPLVDMLNTTSGSEQEAALMALIKLTSGDSSKAYIFSDVEGNPLEGLCKVLSSASSLELKSHAAHLCYILFANSKIRASPVASECIEPLISLMQSGSETAIEYGVCAFDRLLEDEQQVELAAAYNVVDLLVSLISGVNYQLIEATISTLIKLAKDRTPSKHDMVKAGIIDNCLKLFQSAPSLLCSTIAELFLILTNSTAIARSSDAAEIVEPLFNVLLRRDFNLWGQHSALQALVNILEKPQSLASLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDIKTKNAVVPLVRLAGIGILNLQQTAIKALEKISKSWPKVVADAKGIFELSKVIVQDDPQPSPALWESTALVLSNVLSSNAEYYFKVSVVVLVKLLHSTLESTISIALNALIVYERNCASSAEEMMEAGAMDALLHLITSHLCEEASGRLLETLFNNVRVREMKVSKYAIAPLSQYLLDPQTKSQSGKLLVALALGNLSQHERHARAGDSVSACRALISLLEDQPTEEMTMVAICALQNFVMKSRTNRRAVAEAGGILVIQELLLFPNTEVAGQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFINFPKLHISEAATLCIPHLVGALKSGGEVAQDSVLDTFFLLKESWSTMPLDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGINLKQTMGSTNAFCQLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFEVPPKGQKLHIICKSKNTFGKTSLGRVTIQIDKVVTEGVYSGLFSLNHDNNKDGSSRTLEIEIIWSNRISNDDI 2135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04590 2135 Gene3D - 633 970 IPR011989 -
Vivi4g04590 2135 CDD C2 2009 2099 - -
Vivi4g04590 2135 Gene3D - 1150 1343 IPR011989 -
Vivi4g04590 2135 SUPERFAMILY ARM repeat 209 456 IPR016024 -
Vivi4g04590 2135 Gene3D C2 domain 2006 2134 IPR035892 -
Vivi4g04590 2135 Gene3D - 1344 1494 IPR011989 -
Vivi4g04590 2135 SUPERFAMILY ARM repeat 857 1127 IPR016024 -
Vivi4g04590 2135 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Vivi4g04590 2135 Gene3D - 31 156 IPR011989 -
Vivi4g04590 2135 Gene3D - 1002 1149 IPR011989 -
Vivi4g04590 2135 Gene3D - 157 350 IPR011989 -
Vivi4g04590 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Vivi4g04590 2135 Pfam C2 domain 2008 2107 IPR000008 -
Vivi4g04590 2135 SUPERFAMILY ARM repeat 79 796 IPR016024 -
Vivi4g04590 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Vivi4g04590 2135 Gene3D - 1507 1732 IPR011989 -
Vivi4g04590 2135 Gene3D - 1733 2004 IPR011989 -
Vivi4g04590 2135 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Vivi4g04590 2135 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 14 2129 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vivi4g04590 2135 Gene3D - 369 632 IPR011989 -
Vivi4g04590 2135 SMART arm_5 1015 1064 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 1584 1625 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 623 663 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 1416 1456 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 156 200 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 1375 1415 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 244 285 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 201 242 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 544 584 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 665 705 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 1290 1329 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 111 151 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 502 542 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 710 750 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 287 336 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 458 500 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 1834 1874 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 751 791 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 1708 1749 IPR000225 GO:0005515
Vivi4g04590 2135 SMART arm_5 1206 1246 IPR000225 GO:0005515
Vivi4g04590 2135 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2006 2112 IPR035892 -
Vivi4g04590 2135 SMART C2_3c 2008 2104 IPR000008 -
Vivi4g04590 2135 MobiDBLite consensus disorder prediction 1 30 - -
Vivi4g04590 2135 SUPERFAMILY ARM repeat 1588 2005 IPR016024 -
Vivi4g04590 2135 SUPERFAMILY ARM repeat 1175 1545 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04590 Vivi-Chr4 173777589 173790440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04590 473 789 U-box Gene Family AT3G46510 23.750 1.67e-06 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04590 4 173777589 173790440 Vivi4g04590 4 173777589 173790440 ECH