Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04586 ATGGGAGATTCCAAGGTTGAAACAATTTCACGATTAGCTCAATGGAAAATCGACAACTTTGGACCCTGTTCTTACAAGAAATCCGACCCTTTCAAACTCGGAATTTGGAACTGGTACTTGTCGATAGAGAGAAATAGGTATTTGTATATTCATCTGTTTCCTGAACCTTCGCGTGTTTCTAAAGAACAGCCTCCTATTGCTCGCTTTATTCTTCGAGTTTCTAATACTGCTTCATCTTCTTCCTCCTCCTCCTCTCGGAAATTTTATATTTCACCTGTTCATGAAAGGGTGCTTAGAACATGTGATGACTTTGTCTGGCCTGTGGATACTACATTCCTCGGTCGCTTGATTATTGATGTTGAATTTCTTGACCTGAAGATCTATCCTCTGAATGGTGGAGAAGCCAGTTCTATATGGCCATCTGACGGAAAACTGCAATCTGTTGCAACTCAAAACACTCTCCGATGCCTCTCTCGCATGCTTGACGAAGCTATACACGCTGATCTCACCATTATAACTGCAGACGGTACACTTAAAGCTCATAAAGCAGTTATGACTGCAACTTCTCCTGTGTTCGAGGCCTCATATCATGACAGCGACAATGAGAAAGATTCATCTACAATCCACATAGAAAACATGTCACAAGAATCATGCACAGCCCTTCTGAGTTACATCTACGGAACAATAAAGCCTGAAGATTTCTGGAAGCACAGGCTTGCATTGCTTGGAGCAGCCAATAAATACGAAATCAGTGATTTGAAAGATGCGTGCGAGGAAAGCCTACTAGAAGATCTCAGCTCGGGAAATGTTCTTGATAGACTAAATGAGGCTTGGATGTACCAGCTGCACAAGTTGAAGAAAGGATGTTTTGCGTTCTTATTTGATTTTGGTAAGATATATGATGTTAGAGATGAAATAAATACGTTTTTTCGCCATGCTGAAAGGGAACTAATGTTGGAGATGTTTCAAGAAGTGCTTACAATTTGGAAATAG 993 0.4079 MGDSKVETISRLAQWKIDNFGPCSYKKSDPFKLGIWNWYLSIERNRYLYIHLFPEPSRVSKEQPPIARFILRVSNTASSSSSSSSRKFYISPVHERVLRTCDDFVWPVDTTFLGRLIIDVEFLDLKIYPLNGGEASSIWPSDGKLQSVATQNTLRCLSRMLDEAIHADLTIITADGTLKAHKAVMTATSPVFEASYHDSDNEKDSSTIHIENMSQESCTALLSYIYGTIKPEDFWKHRLALLGAANKYEISDLKDACEESLLEDLSSGNVLDRLNEAWMYQLHKLKKGCFAFLFDFGKIYDVRDEINTFFRHAERELMLEMFQEVLTIWK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04586 330 ProSiteProfiles BTB domain profile. 167 226 IPR000210 GO:0005515
Vivi4g04586 330 SMART BTB_4 167 265 IPR000210 GO:0005515
Vivi4g04586 330 Gene3D Potassium Channel Kv1.1; Chain A 141 294 IPR011333 -
Vivi4g04586 330 Pfam BTB/POZ domain 160 263 IPR000210 GO:0005515
Vivi4g04586 330 SUPERFAMILY POZ domain 149 263 IPR011333 -
Vivi4g04586 330 PANTHER OS08G0495500 PROTEIN-RELATED 1 330 IPR044714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04586 Vivi-Chr4 173711467 173714770 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi4g04586 BTB 1.6e-18 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04586 K10523 - gmx:100775687 550.821