Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04584 ATGTCTGCCTCTAGTGAATCTTATTTTAATATTAGATTTTATCATTATCATTCTCATTCTCAACCCACCTTATTCACCAGATACTTTTTCGAAGTTCCCGTAAACATCTTGATTGATTACGATGAACTTGAATGTCAAGATCCTGAGAGTCTTACTAATGCATTTTTAAGTAACACTTTCTCGATCGTGCCTTTTTCTTCGGAAGCGATGGAACAAATTCTACTTCATATGGCTGACTTTGCTAGGCGTATGATTATGGCCAACGACGAAGATCAACAAACATTATGGTTGAATGTTGAAGTTCGTGAAACGCCAAATATTGATAATGTTGTTGATGACGAAAACATACCTATTACGACAATTTTGAATTCGATGGAGAAGATGAAAGTGGGAGATATTGATACTTCTTGTTCAATAGAACAATGTCCAATATGTTTGGAGGAATTTTGCAAAGGTTCAAAACTAGACATTGTTCGAACCAAGTGTATGCATAATTTTCATGAGCATTGTATTGTTCGATGGCTTCAACATTGTGACAATGTTGATCAATTAAAAACTTGTCCATTGTGTCGTTCCCAAATTCAATGA 588 0.3486 MSASSESYFNIRFYHYHSHSQPTLFTRYFFEVPVNILIDYDELECQDPESLTNAFLSNTFSIVPFSSEAMEQILLHMADFARRMIMANDEDQQTLWLNVEVRETPNIDNVVDDENIPITTILNSMEKMKVGDIDTSCSIEQCPICLEEFCKGSKLDIVRTKCMHNFHEHCIVRWLQHCDNVDQLKTCPLCRSQIQ 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04584 195 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 114 194 - -
Vivi4g04584 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 195 IPR013083 -
Vivi4g04584 195 SMART ring_2 142 190 IPR001841 -
Vivi4g04584 195 SUPERFAMILY RING/U-box 122 194 - -
Vivi4g04584 195 Pfam Ring finger domain 141 191 IPR001841 -
Vivi4g04584 195 ProSiteProfiles Zinc finger RING-type profile. 142 191 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04584 140 194 C3H Transcription Factor Family AT4G12190 42.857 3.23e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04584 - K16271 mtr:112418131 174.866