Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04574 ATGTCTCACAATCGCATCACCACCGATTCCCCTCTCTCTCGTCGCATAGTTCGTTCTTTCCTCCATTTCCTCAACCAAGTTGAACCTAGCCCTGGGGTTGATGCTGAAGGAATTGAGGTTGCTAGGGAGTGTTTGGTAGAGGCTTTTAGGATTAATTCGTCTTCTGTATCTGGTGAACCTGATTCGTTGATTGATATATTCAAGTCCTTTGATGCAAATAAGCAATGTGGAGTTAGTAGGGCAGATTGTATGAAAGCTTCTTCAAGTTCACTTTCTGGTCCGGATGCTGCTGATGATAAAAATCATCCTGAGGCGTCGGGATCCATGGATGAAGATTTGACGGAGGACCCTGACATTTCCGTGTCTAAAGATGAACTCTGTGGACAATTCTTTGCTGCTCTGGAGAAACAGCGCTATTTCAGGACCAATATTGATGGAAGTGATGACATAGTGCAATTGGAGAAAGCATCTCGCTTATTTGATAATGGTTTTACGGAGATGGAAAAATCTGGGTATCTGCAGTTTAATATGAAGAATTTGGCTGACTCACTAAAAGCACTAGGTAACAAGGAAATGCAATCCAAGCAATACAATGATGCAGTTGAGTTGTATAATTGTGCAATTGCAATAAATGAAAAGAATGCTGTTTACTACTGCAACAGGGCAGCTGCTTATACTCAGATTAACAAATATACCGAGGCAATCGAAGATTGTCATAAATCTATCGAGATTGATCCGTACTACAGTAAGGCATACAGTCGTTTGGGATTAGCTTATTATGCACAAGGAAAATACAGAGATGCTATTGATAAAGGTTTTCAAAAAGCCTTGCAATTGGATCCCAATAATGAGACCGTTAAGGAAAATATAAGGGTAGCTGTGCAGAAGTTGATGGAAGAGCAACATCATGCCGATAACAATCAGAATTCGAGATCGTCTCCAGAATTCCAAAACCATTCTGCAAGGGGTTCAACAAGCCATGCAGCTCCACCTACATTTGCCTCAATGCAATTTAACCCCAGCAATCTGGCAAGCATGTTCATGTCGGCTACAAATGCGCATCAGGGCTCACATTCTCAGGAAAGTCAACAAGATGCCAATAGCAGTGGAGCTAATGAACCCGGAATTCAATTTGGGGCCAATGTTAATGTAAACCATGATCAAATCTCTCAGGAACTAAGAGGCGCTTTTCAATCTGTGATGGGGATGTTTTCAGGGAATGTACCTCCTGGGCAACCTCGTGATCAAATGAATGGAAGTCAAGAAGATGACAATAGTGGTGAAGCTAACGAACCAGAAGTTCAATTTGGGGGACATGTTGATTTAAACTCTGATCAACTCCCTCAGGAACTAAGAGTCTTTCAAAATATGATGGATATGTTATCAGGGAATGCACCTCCTGGACAACCACATGATCAATTGAATGAAAGAACAGCACCAAACTAA 1446 0.4156 MSHNRITTDSPLSRRIVRSFLHFLNQVEPSPGVDAEGIEVARECLVEAFRINSSSVSGEPDSLIDIFKSFDANKQCGVSRADCMKASSSSLSGPDAADDKNHPEASGSMDEDLTEDPDISVSKDELCGQFFAALEKQRYFRTNIDGSDDIVQLEKASRLFDNGFTEMEKSGYLQFNMKNLADSLKALGNKEMQSKQYNDAVELYNCAIAINEKNAVYYCNRAAAYTQINKYTEAIEDCHKSIEIDPYYSKAYSRLGLAYYAQGKYRDAIDKGFQKALQLDPNNETVKENIRVAVQKLMEEQHHADNNQNSRSSPEFQNHSARGSTSHAAPPTFASMQFNPSNLASMFMSATNAHQGSHSQESQQDANSSGANEPGIQFGANVNVNHDQISQELRGAFQSVMGMFSGNVPPGQPRDQMNGSQEDDNSGEANEPEVQFGGHVDLNSDQLPQELRVFQNMMDMLSGNAPPGQPHDQLNERTAPN 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04574 481 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 176 328 - -
Vivi4g04574 481 MobiDBLite consensus disorder prediction 411 425 - -
Vivi4g04574 481 MobiDBLite consensus disorder prediction 87 117 - -
Vivi4g04574 481 MobiDBLite consensus disorder prediction 302 337 - -
Vivi4g04574 481 MobiDBLite consensus disorder prediction 351 379 - -
Vivi4g04574 481 PANTHER LD24721P 3 414 IPR047150 -
Vivi4g04574 481 MobiDBLite consensus disorder prediction 402 441 - -
Vivi4g04574 481 MobiDBLite consensus disorder prediction 307 337 - -
Vivi4g04574 481 Gene3D Immunoglobulin FC, subunit C 3 73 - -
Vivi4g04574 481 Gene3D Tetratricopeptide repeat domain 175 337 IPR011990 GO:0005515
Vivi4g04574 481 SMART tpr_5 181 214 IPR019734 GO:0005515
Vivi4g04574 481 SMART tpr_5 215 248 IPR019734 GO:0005515
Vivi4g04574 481 SMART tpr_5 249 283 IPR019734 GO:0005515
Vivi4g04574 481 Pfam Tetratricopeptide repeat 250 283 IPR013105 -
Vivi4g04574 481 SUPERFAMILY TPR-like 180 293 IPR011990 GO:0005515
Vivi4g04574 481 ProSiteProfiles TPR repeat profile. 215 248 IPR019734 GO:0005515
Vivi4g04574 481 Pfam Tetratricopeptide repeat 215 247 IPR001440 GO:0005515
Vivi4g04574 481 ProSiteProfiles TPR repeat profile. 249 283 IPR019734 GO:0005515
Vivi4g04574 481 ProSiteProfiles TPR repeat profile. 181 214 IPR019734 GO:0005515
Vivi4g04574 481 MobiDBLite consensus disorder prediction 459 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04574 Vivi-Chr4 173524339 173535849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04574 180 279 U-box Gene Family AT3G07370 31.000 5.01e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04574 K16365 - gmx:100799770 556.984