LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g04571	ATGAACAACCCCTGCGATCTCGCCACACCTAATTCAAAATCAGTAGTTGAACAAACCGAAGAGCTTCAACCATCATGTGCCCCCAAAATCACCAACAAGAAGAGGAAATCACCAGGATTAACCACTCCTGCAAAGAAATCCTCCAGGAATAATACGCCGAGGAAAAAAGCTTTGGTTAGTGGAGTTAAGGGGAATACTTTGCCTGATGTGTTTCGGAAAATTGATTTGCGGTTGGAGGCGAAATTGTCAGCTGAGGAAAATTCAAAGATGTTTGCGGGAAAGCAGATACATCCGTTCTTTTCATCGTGGAAGGTGGAGAAGAAATCTAGGGATTCAGCTGGTTCAGAAGGCTGTTTGTCTGATGCTAAGGGGGGGAGTAGAAGAACTATATGTGGTTCTATTCATGTATTTGAAGATACTCGGGATTATACTTCATCTCTTGACTGGAGTGACTGGAAATTTTTGGGAAATACCACTGTTGTAGATTGTGGTCCAGAAAGTTCAAATTTATCTGTTTTGGAGGGTTCTATTGAACCCTTAAATTTTGATAACTTTCTTAGTGGTGTGAAACCCTCGAGCACTTCAATATCTCAGAATGCATTGTCTTATTCAGATAAACTATGTACACTGTCAGAAAATATGAGGGAAAAGTCACCAGAAAACTCAGCTGTGCTAGCTAATGAGCAAGCAACATGCACTTTAAAGCCAGAAGATGTCATAGTGGACTTGGAGGTGGATGATGACAGTACTGTATCTGGGCAAGCGTGCATTTTTGGAAAATCAGATACCGAGCCACCGAGTATGTTTCTTCGTGAAAGAATGAGTTCTTTCTGCCATAGTTGTGAAGATAAGGCTGAGAGCAGCTTATGGATACACAAGTATAAACCAACAAAAGCCTCAGAGGTATGCGGTAATAATGAATCCCTGAAATTCTTGCGAGACTGGTTACATCTTTGGCATGAAAGACGTTACCAAAACAGAAAGGGTTCCTCTGACAAGGATCATATTGACATACCAAATGTTGATAGCGATTATAACTCTGCTGATTGTGACCATGCTTCAAAAGATGAGGGTTCCCTAAAGAATGTTCTCTTAATTACAGGACCAGTTGGGAGTGGCAAGTCTGCAGCTGTATATGCTTGTGCCCGAGAGCAAGGGTTTGAGGTTTTAGAGCTCAATGCATCAGATTGGCGAAATGGGGCTGCTGTCAAGCAGTATTTTGGAGATGCTCTTGGATCACATGGTGTCAAAAGTTTAGTGAAACACTCTGTGAGTTTAGAGAAGAGAACTGTGAATTTGCTCCCAACTACAGCTTTGCCTGATGTGAAAGCAGCCGAAGAGATGGCTGATGATGTGATTGAAATGATAGCCATATCCGATGTTGGAGATAATAGTCCTGGCGGAGCATCTCAGAAGTTGCACGACAATAATGGTGCACTTACATCTGGTACTGTCCAATCTTTAATTCTAGTTGAGGATGTTGACATCGTTTTTCCTGAAGACCGTGGATGTATTGCTGCCATACAACACATTGCCGAGACAGCAAAAGGGCCAATTATACTGACCAGCAACAGTTATAATGCTGGCCTGCCAATTAATCTCTGTCGACAACGTGTTTCTTTCTCATTGCCATTGCCGGATGAGTTGCTTTGCCATTTGTTCATGGTTTGTGGCACAGAAGAAGTCAACCTCAGTCCTCTTTTACTAGAGAAGTTTATCCAATCTTGTGACAGAGATATTCGTAAAACCATTATGCATCTTCAGTTCTGGCTGCAGAATAAAAAAGATAGTACAGACAAAAAAGTACAGACACTATATGGCTCACTTCCTTTTGATCTTGAGGCTGGTCATAAGATACTACCAAAGATGATACCTTGGAGTTTTCCCTCAGAGTTATCCAAACTAATTGAGAATGAAGTTTCCAAGTCAATAACCATAGCAGAAACTAACTCAAGATGGGAAGGGTTAGTTAACGAAGAGCTTTGCATAAATGACGAGCAAAATAGCTTAGATTTGCAGTGTACAGGAACTGGTTGTTTAGAGCCCAAGGTAGAGGTCATGAACAGAATTGAACCTATTGCAGACTGCGGTGAGTTTGATAGTCAATATAGTTCTATCACTGAGCTTAGCAATTGTTCTGGATCCCCAGTAACACCCTCTTTGCAAAAGGACCAAGGTCAACTTTTTGTGATGTCCTCTGATGATATGGATAAGGATCCAAATAGTAGACATTCTGTAAATGTTCATGACGAAGCTTACACGAGACAAACCCATGAAGGCAACACTGAATCTTTCTTTAAGTTTCTATTGAATCAAAGCTATGCCAACATGTCTTTTTGCGAGCTGCTGCATTCTAGTTTGGAAGATTCAGAGGAGGAACATTGTAAATATTTAGATACAACTTATGATGCATGCTTAAACAAAACACATAAATCACCTGATCTGTCCCGGTTTCCAGAACCAAGCTTTGTTTCCGAGACTGCAAAATCTGAAGTAGTGTCTTCTGGGCAGCTTGCCTGTCCAGTAGATGTTTCTCTGGATAATGAACTGAAACCATTCTCTTTCAGGGTTTGTCAGCCCGTGGCCAAAGTTCCTAAAGATCAAGATTTGTTGGTGAATACTGAAATTCCCAAATCTTCTCCAAGAGCAATTTCACAAGATTTTACTGATGTGAACATGGAAATTGCATCTGCATCTGTGATGGATCAGTGCAGTCAAACTGATTTAAAGTTGGACCCAAAGTCTGTTGACTGTTCATCTATTGAGATAGATCTGGTGCAAAATTCGTGGAGGAAACTTCGTGATTGTCAACCAGATTTAAGACAGCATGCCACCTCAGAACAGATAGGCGCCATCGAAGTTGTTAAACTTGCTAGTGGACTGAGCGATCTAATTTCAGAAGCTGACTTGTTATTTCGTAATCACCAACAAAAACAGTGTGGTATTATGGAACCTCCAATTTTCCTGGCTGATGATGCCACATTTAGTTGGTATGATGAGCAAATGATGATGTCAACGATTGCTGAACATGGTTTCTGCTTTTATGCCAAGCATATAGTTGACGCGGGATCCAAAGTCGGTTTTGAGAACAGGGTAGACGTAACTTTAGAGATGTTGGCTTCTACTACAAATATTATGGCTATGGGGAAGTTATCTAGACAGGACGACACCAAAACAATGAATAACCATACTAAAGAGCTATTAGAGGTGAACAGCACAAGAAATGATAAAAAGAGTATGCAATACAACGAAAGCAGAACATCTCTGTTTAACGTGATCCGATCCATTGTTCCTAAAAGATCATCATCTGCAATTATAGGCATTGCATTCAATGAATTTCTCTCTTCACTACGCCAAATTTCAATTTCAGAGGGTTTCCGCATGTCACAAGGTGTTAAAAACATGAGAAAAGGAAGGCGAAGTGCTCAACATTATTTGAGCAGAGGTAAAATGTTGTCTCCGGAAGATATATCATTGTTGTGTGAAGGTGATTTGTACAGAAAGATATCTTCACAGTATGCTGCTAACATGGAAAATATAACAGAACATGATTGA	3555	0.4053	MNNPCDLATPNSKSVVEQTEELQPSCAPKITNKKRKSPGLTTPAKKSSRNNTPRKKALVSGVKGNTLPDVFRKIDLRLEAKLSAEENSKMFAGKQIHPFFSSWKVEKKSRDSAGSEGCLSDAKGGSRRTICGSIHVFEDTRDYTSSLDWSDWKFLGNTTVVDCGPESSNLSVLEGSIEPLNFDNFLSGVKPSSTSISQNALSYSDKLCTLSENMREKSPENSAVLANEQATCTLKPEDVIVDLEVDDDSTVSGQACIFGKSDTEPPSMFLRERMSSFCHSCEDKAESSLWIHKYKPTKASEVCGNNESLKFLRDWLHLWHERRYQNRKGSSDKDHIDIPNVDSDYNSADCDHASKDEGSLKNVLLITGPVGSGKSAAVYACAREQGFEVLELNASDWRNGAAVKQYFGDALGSHGVKSLVKHSVSLEKRTVNLLPTTALPDVKAAEEMADDVIEMIAISDVGDNSPGGASQKLHDNNGALTSGTVQSLILVEDVDIVFPEDRGCIAAIQHIAETAKGPIILTSNSYNAGLPINLCRQRVSFSLPLPDELLCHLFMVCGTEEVNLSPLLLEKFIQSCDRDIRKTIMHLQFWLQNKKDSTDKKVQTLYGSLPFDLEAGHKILPKMIPWSFPSELSKLIENEVSKSITIAETNSRWEGLVNEELCINDEQNSLDLQCTGTGCLEPKVEVMNRIEPIADCGEFDSQYSSITELSNCSGSPVTPSLQKDQGQLFVMSSDDMDKDPNSRHSVNVHDEAYTRQTHEGNTESFFKFLLNQSYANMSFCELLHSSLEDSEEEHCKYLDTTYDACLNKTHKSPDLSRFPEPSFVSETAKSEVVSSGQLACPVDVSLDNELKPFSFRVCQPVAKVPKDQDLLVNTEIPKSSPRAISQDFTDVNMEIASASVMDQCSQTDLKLDPKSVDCSSIEIDLVQNSWRKLRDCQPDLRQHATSEQIGAIEVVKLASGLSDLISEADLLFRNHQQKQCGIMEPPIFLADDATFSWYDEQMMMSTIAEHGFCFYAKHIVDAGSKVGFENRVDVTLEMLASTTNIMAMGKLSRQDDTKTMNNHTKELLEVNSTRNDKKSMQYNESRTSLFNVIRSIVPKRSSSAIIGIAFNEFLSSLRQISISEGFRMSQGVKNMRKGRRSAQHYLSRGKMLSPEDISLLCEGDLYRKISSQYAANMENITEHD	1184

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g04571	1184	MobiDBLite	consensus disorder prediction	1	26	-	-
	Vivi4g04571	1184	Gene3D	-	287	542	IPR027417	-
	Vivi4g04571	1184	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	288	606	IPR027417	-
	Vivi4g04571	1184	MobiDBLite	consensus disorder prediction	1	59	-	-
	Vivi4g04571	1184	PANTHER	CELL CYCLE CHECKPOINT PROTEIN RAD17	12	1171	IPR004582	GO:0006281
	Vivi4g04571	1184	Gene3D	-	545	608	-	-
	Vivi4g04571	1184	FunFam	p-loop containing nucleoside triphosphate hydrolase superfamily protein	546	607	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g04571	Vivi-Chr4	173459069	173467199	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g04571	286	401	Core DNA Replication Machinery Family	AT5G22010	29.915	2.75e-06	50.1

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g04571	K26118		-	gmx:100815984	1240.33

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