Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04564 ATGAGTGAGTTAACATGTTGTGAGAAACTTAATGCATGGCTAAGAAAGTCAAAGGATTATTTGCTTATAATAAGTTTGCAATTTGGTTCTGCTGGCATGTATGTTCTCACCATGGATGCACTTAACAAGGGAATGAGTCATTATATTTTTGTGGTTTATCGTAATATTATTGCTACTGTTGCTCTTGCTCCATTTGCATTCTTTCTCGAAAGGAAAATTAGGCCAAAGATGACAGTTCGAATATTTTCGGAAATTATGGCACTGGGTTTTGTTGAGATAATACTTGATCAATGTTTCACGTTTTTGGGGATGAAGCTAACATCATCATCTTTTGCATCTGCGGTTATGAATTCCGTACCATCCATCACCTTTGTACTTGCAATCTTATTTAGATTGGAGAGGATGAAACTTAGGGAGATAGGATGTCAAGCAAAAGTGATTGGCACCGTGGTGAGTCTTGGAGGTGCTTTTCTAATGGCACTATATAAAGGTCCTGTTCTTCATATTGCTGGTTCTTCAACAGTAAAACAGATGCACCAACCTGAAAATGTCAATGATCCAACTGGTTCACACTGGCTCCTTGGTGCTGTGTTCCTCCTCATCGGTTGTGCTGGCTTTGCCGGTTTCTACATTTTACAAACCATAACATTGAAAAAGTATCCGGCAGAAATGTCTCTTGCCACATGGATTTGTTTCATTGGTGCACTTCAAAGCAGTGTAGTAACTTTTTTCATGGAGCGTCGTAGCCTTGAAGCTTGGGCTTTGGGCCTGGACTCTAGACTATTTGCTTCCTTATACGCGGGGATAGTAACTTCAGCAATTCAATTTTACGTACAAGGTTCTGTAATTAAATCTATGGGACCTGTTTTTGTGACTGCTTTTAATCCTCTTCGTATGATCATAGTCATAGCTTTAGCTTGTATCTTCATCTCAGAAAAACTGCACCTCGGAAGCATTGTTGGAGGAGTGGTGGTGGTTACTGGATTATATCTTGTTGTATGGGGAAAATCAAAGGAACAAAAGAGTATCATGTTAGAGAAAGAGTCCCTGCAAAAAATCTCCCAACAAGGACAACAAAAATTATCGATTACTGTCTCCAAAATTGATGACAATGTTAATACTAATAAAGCTCAATTGGTCACAGTTGTAGATCCAACAAGTAAATAG 1167 0.3873 MSELTCCEKLNAWLRKSKDYLLIISLQFGSAGMYVLTMDALNKGMSHYIFVVYRNIIATVALAPFAFFLERKIRPKMTVRIFSEIMALGFVEIILDQCFTFLGMKLTSSSFASAVMNSVPSITFVLAILFRLERMKLREIGCQAKVIGTVVSLGGAFLMALYKGPVLHIAGSSTVKQMHQPENVNDPTGSHWLLGAVFLLIGCAGFAGFYILQTITLKKYPAEMSLATWICFIGALQSSVVTFFMERRSLEAWALGLDSRLFASLYAGIVTSAIQFYVQGSVIKSMGPVFVTAFNPLRMIIVIALACIFISEKLHLGSIVGGVVVVTGLYLVVWGKSKEQKSIMLEKESLQKISQQGQQKLSITVSKIDDNVNTNKAQLVTVVDPTSK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04564 388 Pfam EamA-like transporter family 20 160 IPR000620 GO:0016020
Vivi4g04564 388 Pfam EamA-like transporter family 194 333 IPR000620 GO:0016020
Vivi4g04564 388 PANTHER WAT1-RELATED PROTEIN 21 346 IPR030184 GO:0016020|GO:0022857
Vivi4g04564 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 229 338 - -
Vivi4g04564 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04564 Vivi-Chr4 173352041 173354480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04564 14 347 Nodulin-like Gene Family AT1G44800 47.181 3.58e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04564 - - gmx:100813852 561.222