Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04533 ATGCCACCCTTAACCCTTCTTATGGTGGATGTGTTACTCATACTAATAATATTCTCGTCCAACAAAGTGTATGGTGATGAACAACAAGAATCGTGTTCTCGAAAGTGCGGTGTTCATAACATCACATACCCTTTCCGACTGAAAGACAGTCCACTAAACTGTGGTGACACAAGATACAACCTATCATGCGAAGACAACAACCAATTGATTTTGTACAATGGAACAAATGGAAAATACTATGTACAATCAATTCATTACAACAACTTCACTATCCGACTATTGGATTTCAATCTTCGATCTAACAATTCACTCCCTCCTTATTATTCTTTAGGAGGCTACAATTTCAGTTCTTCCTTCTCATCACCCTACCTTTTCTATCAATACAAAAACTTTTCTTATACAGATATATTAACAAAATCTATGCTCTATGTGACTTGTCCAAATCCAGTGCAACATTCTTCTGGTCACATGTATGGTCCTAACTGCATGAATAGTTCTTCACATTTAGAGTATAAGAATTCTTTCTATGTTAGTGGCTACAACAAAACTCTTTCACAATTGGGGCTGAGAGACAAGTGTCGTATTGAATTGATGTTTCTCACATCTTGGCATGTTGAAGATGGAAACAACAACATTTCTTGCAAGAACATTCGTCGCATGATGTTTGATGGAATTGAACTTTCTTGGATTAATAGTTTTTGTAAAGATATATGGTCTGTGGAAGTCGATCAATATAACCAACCTCGATGTTGTAAGACTTATTTTTCTCATTTCCTCTTCTTTATAGGTGAGTTGGTTTTTCTTTACATTCTCAAACTTGTTCTTGGAATGCCATGTATCATTGGATTATTGATATGGAAATGTCGACGGAAACATTTATCAATGTACGATGACATCGAAGGTTTTCTACGTAGTAGCAATAACATCATGCCATTAAGGTACTCTTACAAAGAAATAAAAAAGATAACCAACCAATTCAAGACAAAATTAGGTAAAGGAGGCTATGGATCTGTTTTCAAAGGACAACTTCAGAATGGTCATCTTGTAGCTGTCAAAGTATTGGACAAAGCCAAGTCCAACGGACAAGATTTTGTTAATGAGGTTGTTACCATTGGTAGGATTCACCATGTTAATGTAGTACAACTGATTGGTTTTTGCATAGAAGGATCAGAACGTGCTCTTATATACGAATTCATGCCAAATGGGTCACTTGAAAAATACATATTTTCTCACATTGAAGAGAGTTATTCCTTGAGTTGTGAAAAATTATATTCCATTTCTCTCGGAGTGGCTCGAGGCATTGAGTATTTGCATAATGGTTGCAATATGAAAATTTTACATTTTGACATAAAGCCTCATAACATCCTTCTTGATGAGAATTTTAATCCAAAAGTTTCAGATTTTGGACTAGCGAAACTTTGTCCTACAGATAACAGTAATGTGTCATTAACTGCAGTAGGAGGAACCATTGGATATATGGCCCCTGAACTATTCTATAGAAATGTTGGTACAGTATCTTACAAAGCCGATGTGTATAGTTTTGGGATGCTGTTAATGGAGATAGCAAGTAGAAGAAAGAACTTGAATGAATCGGCTGAGCAATCCAGCCAACTTTATTTCCCATTTTGGGTCTATGGTCGATTACATGATGGAAGAGAAGTTACAATTGAGAATGACACCAATCAGGAAATGAAATTGACAAAGAAAATGATGATTGTGGCTTTATGGTGTATCCAGACAAAACCTGATGAGCGTCCTTCGATGGATAAAGTGATTGAGATGCTTGAAGAAGAAGATGAGGATTTGCAAATGCCCAATAAACCATACCTTTATCCACAAGATTCACTTGATGATGAGTATGTTAGAAATAATAGTACTAGCGGTTCATGGTCTTCTTCTGGTACATTAATAACTAATCCCATGCAAACAACCTAA 1935 0.3587 MPPLTLLMVDVLLILIIFSSNKVYGDEQQESCSRKCGVHNITYPFRLKDSPLNCGDTRYNLSCEDNNQLILYNGTNGKYYVQSIHYNNFTIRLLDFNLRSNNSLPPYYSLGGYNFSSSFSSPYLFYQYKNFSYTDILTKSMLYVTCPNPVQHSSGHMYGPNCMNSSSHLEYKNSFYVSGYNKTLSQLGLRDKCRIELMFLTSWHVEDGNNNISCKNIRRMMFDGIELSWINSFCKDIWSVEVDQYNQPRCCKTYFSHFLFFIGELVFLYILKLVLGMPCIIGLLIWKCRRKHLSMYDDIEGFLRSSNNIMPLRYSYKEIKKITNQFKTKLGKGGYGSVFKGQLQNGHLVAVKVLDKAKSNGQDFVNEVVTIGRIHHVNVVQLIGFCIEGSERALIYEFMPNGSLEKYIFSHIEESYSLSCEKLYSISLGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLAKLCPTDNSNVSLTAVGGTIGYMAPELFYRNVGTVSYKADVYSFGMLLMEIASRRKNLNESAEQSSQLYFPFWVYGRLHDGREVTIENDTNQEMKLTKKMMIVALWCIQTKPDERPSMDKVIEMLEEEDEDLQMPNKPYLYPQDSLDDEYVRNNSTSGSWSSSGTLITNPMQTT 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04533 644 FunFam PR5-like receptor kinase 399 607 - -
Vivi4g04533 644 Gene3D Phosphorylase Kinase; domain 1 304 398 - -
Vivi4g04533 644 Gene3D Transferase(Phosphotransferase) domain 1 399 607 - -
Vivi4g04533 644 Pfam Wall-associated receptor kinase galacturonan-binding 32 95 IPR025287 GO:0030247
Vivi4g04533 644 SUPERFAMILY Protein kinase-like (PK-like) 304 596 IPR011009 -
Vivi4g04533 644 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Vivi4g04533 644 MobiDBLite consensus disorder prediction 621 644 - -
Vivi4g04533 644 SMART serkin_6 324 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04533 644 Pfam Protein kinase domain 326 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04533 644 ProSiteProfiles Protein kinase domain profile. 324 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04533 644 FunFam serine/threonine-protein kinase PBS1-like 297 398 - -
Vivi4g04533 644 PANTHER RUST RESISTANCE KINASE LR10-RELATED 296 615 IPR045874 GO:0004672
Vivi4g04533 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04533 Vivi-Chr4 172712559 172714877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04533 313 627 Receptor kinase-like Gene Family AT5G38280 49.533 5.32e-103 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04533 Pkinase 8.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04533 - - psat:127093935 809.29