Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04531 ATGAACAGTTGTTATTATGTTATGGGATTGTTGTTGTTCATTATTTCCTTTCTTGTTGGAACAACAACATCCACTGCAACTAACTGTTCAGAAAATCCCTCATGCGGAAATCTTGTTATCAGATTCCCTTTCAGAATCAAAAACCAACAACCACTTTCCTGTGGCTACCCTGGCTTTGATTTAACTTGTTCATCAAACCAAACCATGATTCAACTTCCTCATAAATTGAAACTCAAAGTCGATTTCATTGACTACAAGCGCCAAACAATTCAACTTTCCGATCCACAAACTTGTCTTTACAAACACATCCACAGCCTCAATCTTTCATCTTCTCATTTCAACTACTTGAAACGTGACTATGATGATTTTCAGGACTATTACTTTTTCAATTGTTCACCTTTGATTAGAAATGAGTTAGAATCCTACTTGGTTTCATGTCTAAGCACTTCAACCTCTCAAACATATGCTATCCCTTCTGATAGTCTCATTGATTACCTTCCCCTCTCTTTTTGCACCAAAATGTATAATGTTTCATTCAAACGTTCGGATTATGTTCGTTTGATGTGGTCTCGGCCTGATTGTAAACACTGTGAATCAAAAGGAAATATATGTGGCTGGAATAATGCTACACACTCCAAGGAATATGCTTGTTTCCCCAAAGATTCATCAACGGCTTTACTCACCACAGGGTCAATTCTTGGATCGTTGTTTTTCATCTTGTTGACTGGTGCAGTTTACCATATTTATGACATTTACATACTAAAGAAAGCAAAACAAGCGATTATAGAAAGGTTTTTGGAAGACTATAGAGCTCTTAAGCCTACAAGATACTCTTATGTAGAAATTAAGAGAATCACAAATAACTTTGGAGACAAGTTAGGAGAAGGAGCCTATGGAAGTGTCTATAAAGGAAGCATTTCAAAAGAGATTAGTGTTGCTGTGAAAATACTAAACTTTTCTCAAGGAAATGGGCAGGATTTTCTCAATGAAGTTGGTACAATGGGTAGAATTCACCATGTTAATATTGCTCGATTGATAGGTTTTTGCGCCGATGGGTTTAAAAGAGCGCTTGTGTATGAATTTTTGCCAAATGGTTCATTGCAAAAGTTCATAAATTCACCAGACAATAAGAAAAACTTTCTTGGTTGGAAAAAGATGCATGAAATTGCTTTAGGAATAGCTAAAGGAATTGAGTATCTTCATCAAGGGTGTGATCAACGGATCCTCCATTTCGATATCAAACCACAAAACGTGTTACTTGACCATAACTTCATTCCAAAAATATCTGATTTTGGTCTAGCTAAGTTGTGTTCTAGAGATCAGAGCATAGTATCGATGACTACGGCTAGAGGAACTTTGGGCTACATTGCTCCCGAAGTTTTTTCAAGAAACTTTGGAAATGTGTCTTACAAATCAGATGTTTATAGTTATGGAATGATGTTGCTTGAAACAATAGGAGGAAAGAAGATCACGGAGGATTTAGAGAAAAACACTAGTCATGTTCACTATCCGGAATGGATTCATAATCTTTTAGATGATCAAGAGGAAATGAGAATTCATGTTGATGACGAAGAGGATGAAAAAACTGCAAGAAAAATGGCCATTGTAGGACTTTGGTGCATTCAATGGCATGCTATGGATCGACCATCAATGCAAATGGTGGTTCAAATGTTGGAGGGAGAGGAAGACAAAACTCCAATACCTCCCAATCCTTTTGCTTCTCAATCTAGACGAACTGGGAGAAATGGTTCAATTGCAATTACCAGACAACTAACACAAGATTTAGATGTAATTGAAGAGTTAGAATGA 1809 0.3665 MNSCYYVMGLLLFIISFLVGTTTSTATNCSENPSCGNLVIRFPFRIKNQQPLSCGYPGFDLTCSSNQTMIQLPHKLKLKVDFIDYKRQTIQLSDPQTCLYKHIHSLNLSSSHFNYLKRDYDDFQDYYFFNCSPLIRNELESYLVSCLSTSTSQTYAIPSDSLIDYLPLSFCTKMYNVSFKRSDYVRLMWSRPDCKHCESKGNICGWNNATHSKEYACFPKDSSTALLTTGSILGSLFFILLTGAVYHIYDIYILKKAKQAIIERFLEDYRALKPTRYSYVEIKRITNNFGDKLGEGAYGSVYKGSISKEISVAVKILNFSQGNGQDFLNEVGTMGRIHHVNIARLIGFCADGFKRALVYEFLPNGSLQKFINSPDNKKNFLGWKKMHEIALGIAKGIEYLHQGCDQRILHFDIKPQNVLLDHNFIPKISDFGLAKLCSRDQSIVSMTTARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGKKITEDLEKNTSHVHYPEWIHNLLDDQEEMRIHVDDEEDEKTARKMAIVGLWCIQWHAMDRPSMQMVVQMLEGEEDKTPIPPNPFASQSRRTGRNGSIAITRQLTQDLDVIEELE 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04531 602 PANTHER RUST RESISTANCE KINASE LR10-RELATED 259 576 IPR045874 GO:0004672
Vivi4g04531 602 SMART serkin_6 287 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04531 602 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
Vivi4g04531 602 FunFam PR5-like receptor kinase 362 569 - -
Vivi4g04531 602 Pfam Protein kinase domain 290 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04531 602 ProSiteProfiles Protein kinase domain profile. 287 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04531 602 MobiDBLite consensus disorder prediction 562 581 - -
Vivi4g04531 602 Pfam Wall-associated receptor kinase galacturonan-binding 29 94 IPR025287 GO:0030247
Vivi4g04531 602 Gene3D Transferase(Phosphotransferase) domain 1 362 567 - -
Vivi4g04531 602 SUPERFAMILY Protein kinase-like (PK-like) 271 559 IPR011009 -
Vivi4g04531 602 FunFam serine/threonine-protein kinase PBS1-like 255 361 - -
Vivi4g04531 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Vivi4g04531 602 Gene3D Phosphorylase Kinase; domain 1 263 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04531 Vivi-Chr4 172678933 172681147 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04531 29 575 Receptor kinase-like Gene Family AT1G66910 36.885 3.23e-116 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04531 Pkinase 4.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04531 - - aprc:113873873 784.252