Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04526 ATGTCATTTCTTGCAACACTAAACCGTGTAGTGGCGGTAGTATTACTACTACTAATACTCTCGTACAAATCTTATGGTGATGAACAACAAGATTCATGTTCTCAAAGGTGCGGTGTCCATAACATCACTCACCCTTTCCGGTTGAAAAACAGTCCCAAACACTGTGGTGACGAAAGGTACAACTTGTCCTGTGAGAACAACAACCAATTGATGTTGTACTACAATTCAGTTGGAAAATACCACGTTCAATCAATTAATTACAACAACTTCACTATAAGATTGTTGGATTTCAATTACTCCAATTATTCTATCCTCCATCCTCTAGGATCCTATAATTTCACTTCCGACAATACCGAAACCTCGCCGTACCAAGTGTATGGGGATCTCTATAAATCATTGGTAAAGCCTATTTTATATCTAAACTGTCCAAATCGTGTCCAATATTCTGAGGATATTTATTTTCCTACCCCTATCTGTATCAACATTAGTGATTCGTATCCGCAGCAAAGAAATTCTTCCTATGTCAATTCTATTAAATTTGGATATGACAAATCTCTTTCTAGATTGGGGCTGGAAGACGGGTGTCGTATAGAGTTTATGTATCTCACTTCTTGGGGTTTACAAGATGGAAACAACAACATGTCTTGTACGGACATCCGCAGTATGATGCTTTATGGATTTGAACTTTCTTGGCTCAACAGTCTTTGTAAAGATGGATGGTCTTCATACCTCGATGAGAATGGCCAACATGGATGTGATCATGACGAAAACTGGAGTTTTCTGGCTTTGGTTGTCATAGCTATCTTGATTTACATTGGTATGTTTTTTGGCTGTCTATTTGGTGTTAAAATTATTTTTGGAGTGCCATCCATTGTTGTATTATTAATCTACAAATGGAGACAGAAACATTTATCGATATATGATGGAATAGAAGATTTTCTGCAAAGTGACAATAACATCATACCTTTAAGATACTCTTACAAAGACATAAAAAAGATAACAGAAAAATTCAAAACAAAACTAGGTCATGGAGGTTATGGATCTGTTTTTAAAGGAAAACTTCGAAGTGGTCGTCTTGTAGCAGTCAAATTATTGGACAGAGCCAAGTCCAACAATGGTCAAGATTTTGTTAATGAAGTTGTTACCATAGGTAGGATTCACCATGTTAATGTGGTGCAACTTATTGGTTTTTGTATGGATGGGTCAAAACGTGCTCTTATATACGAGTTCATGCCAAATGGATCCCTTGAGAAATATATACATTCTCATATTGAAGAGAGACATTCCTTAAGTTGTGAAAAATTGTATTTCATTTCTCTTGGAGTGGCTAGAGGCATTGATTACTTGCATAACGGATGCAATATGAAAATTCTACACTTTGACATAAAGCCTCATAACATACTTCTCGATGAAAATTTCAATCCAAAAGTTTCTGATTTTGGATTAGCTAGACTTTATTCTACAGATAAAAGTATTGTGACATTAACTGCCGCAAGGGGAACCATTGGATACATGGCTCCTGAGCTATTCTACAGAAATGTTGGGACAATATCTTACAAAGCTGATGTTTATAGCTTTGGAATGTTGTTAATGGAGATGGCAAGTAGAAGGAAGAACTTGAATGCATTGGCTGATCAATCTAGCCAGATATATTTCCCTTTTTGGATTTATGATCAATTACATGATGGAAGGGAAATAACAACTGAGAATGACACAGATCAAGAGATGAAATTGGCAAAGAAAATGATGATTGTGGCTTTATGGTGTATACAGACAAAACCTGAGGATCGTCCTTCGATGAATAAAGTGTTGGAGATGCTTGAAGAAGACGATGAAGATATGCAAATTCCTAGTAAGCCTTACTTTTGCCTACAAGATCATCCAGTTGCAGATGTTAAAGATGATGATATTGGTAGCTCATGGACTTCATATGGTACAACACTAAGTGATCCCAAGGAACCCACTTGA 1968 0.3643 MSFLATLNRVVAVVLLLLILSYKSYGDEQQDSCSQRCGVHNITHPFRLKNSPKHCGDERYNLSCENNNQLMLYYNSVGKYHVQSINYNNFTIRLLDFNYSNYSILHPLGSYNFTSDNTETSPYQVYGDLYKSLVKPILYLNCPNRVQYSEDIYFPTPICINISDSYPQQRNSSYVNSIKFGYDKSLSRLGLEDGCRIEFMYLTSWGLQDGNNNMSCTDIRSMMLYGFELSWLNSLCKDGWSSYLDENGQHGCDHDENWSFLALVVIAILIYIGMFFGCLFGVKIIFGVPSIVVLLIYKWRQKHLSIYDGIEDFLQSDNNIIPLRYSYKDIKKITEKFKTKLGHGGYGSVFKGKLRSGRLVAVKLLDRAKSNNGQDFVNEVVTIGRIHHVNVVQLIGFCMDGSKRALIYEFMPNGSLEKYIHSHIEERHSLSCEKLYFISLGVARGIDYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLYSTDKSIVTLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMASRRKNLNALADQSSQIYFPFWIYDQLHDGREITTENDTDQEMKLAKKMMIVALWCIQTKPEDRPSMNKVLEMLEEDDEDMQIPSKPYFCLQDHPVADVKDDDIGSSWTSYGTTLSDPKEPT 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04526 655 Pfam Protein kinase domain 338 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04526 655 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247
Vivi4g04526 655 MobiDBLite consensus disorder prediction 639 655 - -
Vivi4g04526 655 ProSiteProfiles Protein kinase domain profile. 335 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04526 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Vivi4g04526 655 SMART serkin_6 335 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04526 655 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Vivi4g04526 655 Gene3D Transferase(Phosphotransferase) domain 1 411 619 - -
Vivi4g04526 655 Gene3D Phosphorylase Kinase; domain 1 315 410 - -
Vivi4g04526 655 MobiDBLite consensus disorder prediction 636 655 - -
Vivi4g04526 655 PANTHER RUST RESISTANCE KINASE LR10-RELATED 308 625 IPR045874 GO:0004672
Vivi4g04526 655 FunFam serine/threonine-protein kinase PBS1-like 309 410 - -
Vivi4g04526 655 SUPERFAMILY Protein kinase-like (PK-like) 317 608 IPR011009 -
Vivi4g04526 655 FunFam PR5-like receptor kinase 411 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04526 Vivi-Chr4 172564534 172580686 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04526 15 632 Receptor kinase-like Gene Family AT5G38260 35.061 9.67e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04526 Pkinase 8.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04526 - - psat:127093935 1052.35