Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04525 ATGATGGATAACATTCTTGGTCTTCTCAAACTTCGTATCAAAAGAGGAATTAATCTTGCAATTCGTGATGCTAACTCCAGCGATCCTTATGTTGTTGTCAACATGGGTGAACAGAAGCTGAAGACTAGTGTTGTGAAAAACAATTGCAACCCTGAGTGGAATGAAGAACTAACCCTTTCAATAAGTGATGTTCAAACTCCAATACATCTGACAGTTTTTGACAAAGACACATTCTCTATCGATGACAAAATAGGTGATGCAGAGATCGATTTGAAACCATATGCTAATGCTATACAAATGAAATTGGATGATACTCTTTCAGATGGTTGTGCAATTAAGAAGGTTCAAGCAAATAGGACTAATTGTCTTGCTGAAGAGAGTAGTTGTATTTGGAAAGATGGGAAAATAATCCAAGAAATGATTCTAAGATTGAGAAATGTTGAGAGTGGGGAATTGGTGGTGGAAATTGAATGGGTGGATGTTCCTGGTAGCAGAGGTCTATTAGGGGGACAATGTTAA 519 0.3738 MMDNILGLLKLRIKRGINLAIRDANSSDPYVVVNMGEQKLKTSVVKNNCNPEWNEELTLSISDVQTPIHLTVFDKDTFSIDDKIGDAEIDLKPYANAIQMKLDDTLSDGCAIKKVQANRTNCLAEESSCIWKDGKIIQEMILRLRNVESGELVVEIEWVDVPGSRGLLGGQC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04525 172 SMART C2_3c 8 103 IPR000008 -
Vivi4g04525 172 Pfam C2 domain 8 93 IPR000008 -
Vivi4g04525 172 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 159 IPR035892 -
Vivi4g04525 172 Gene3D C2 domain 3 165 IPR035892 -
Vivi4g04525 172 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Vivi4g04525 172 CDD C2_ArfGAP 6 150 - -
Vivi4g04525 172 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 165 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04525 Vivi-Chr4 172562504 172563437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04525 39 167 C2H2 Transcription Factor Family AT1G70790 65.385 6.38e-58 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04525 - - gmx:100788395 266.159