Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04524 ATGATCGAGACAACATGGGAAGACAATTCATGGATGATGGATAATGTTCTTGGTCTTCTCAAAATACGTATCAAAAGAGGAATTAATCTTGCCATTCGTGACTCTATTTCCAGCGACCCTTATGTTATTGTGAACATGGGTGAACAGTTGCAAAAGCTGAAGACTAGTGTTGTGAAAAATAATTGCAACCCTGAATGGAATGAAGAACTAACCCTTTCAATAAAGGATGTTCATACTCCAATACATTTACAAGTTTTTGACAAAGACACATTCTCTATCGATGACAAAATAGGTGATGCGGAGATAGACTTGAAACCATATGCTAATGCTGTACAAATGAAATTGGATGATACTCTTCCAGATGGTTGTGTAATCAAGAGGGTTCAAGCAAATAGGACTAATTGTCTTGCTGAAGAGAGTAGTTGTATTTGGAAAGATGGGAAAGTAATCCAAGAAATGACTCTGAGATTGAGAAATGTTGAGAGTGGTGAATTGGTTGTGGACATTCAATGGGTGGATATTCCTGGGAGTAGAGGTCTATTAGGGGGACAAAGTTAA 558 0.3763 MIETTWEDNSWMMDNVLGLLKIRIKRGINLAIRDSISSDPYVIVNMGEQLQKLKTSVVKNNCNPEWNEELTLSIKDVHTPIHLQVFDKDTFSIDDKIGDAEIDLKPYANAVQMKLDDTLPDGCVIKRVQANRTNCLAEESSCIWKDGKVIQEMTLRLRNVESGELVVDIQWVDIPGSRGLLGGQS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04524 185 Gene3D C2 domain 14 178 IPR035892 -
Vivi4g04524 185 ProSiteProfiles C2 domain profile. 1 119 IPR000008 -
Vivi4g04524 185 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 15 178 IPR044562 -
Vivi4g04524 185 SMART C2_3c 19 116 IPR000008 -
Vivi4g04524 185 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 171 IPR035892 -
Vivi4g04524 185 Pfam C2 domain 19 106 IPR000008 -
Vivi4g04524 185 CDD C2_ArfGAP 17 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04524 Vivi-Chr4 172545119 172546060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04524 52 180 C2H2 Transcription Factor Family AT1G70790 63.846 4.81e-57 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04524 - - qsa:O6P43_032566 258.07