Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04515 ATGGCATCATCCATAACCCTTGTTATGGTGGCAGTGTTACTAATACTCATATTTCCTCCCAACAAAGCTTATGGCAGTGATGAACAACAACAGTTGTGTTCTCGAAGGTGCGGTGTCCATAACATCAGCTCTCCTTTCCGATTGAAAGACAGTCCAGAAAACTGCGGTGACACAAGATACAACCTATCATGTGAAAACAACAACCAATTGATTTTGTATGATATATCATATGGAAGATACTATGTACAATCAATTAATTACAACAACTTCACTATCCGACTGTTGGATTTCAATCTTGTTTACTCTAATTATTCTCTCCCTCCTGATTATTCATTAGGACTCTATAACCTCAGTTACACCTTTCCCTACCTTGATTATTATCAATACAAAAATGGGAGTTATTATACATTGGCTAAATCAATATTATTTGTGAGCTGTCCAAATCATCGGATGGAATATTCGTATGTTGGTAACTGTATGAATATTAGTTCATACTCACAGTATGGGAATCCTTTCTATGTTGGTGCTTATAGCAAATCTATTTCAGAATTGGGGCTGGGAGACGGATGTCGTATAGAGTTTAAGTATGTCACATCTTGGGATTTACAAGATGGAAACAACAACAACACTTCTTGCACGGACTTCCGCCGTATGATGCTTTATGGATTTGAACTTTCTTGGCTCAACAGTCTTTGTAAACATGGATGGTTTTCACACCTCGATGAGAATAGCCATGTTATCTGTCATCGAGTCATGTATGTTCTTGCAGGATGGGTCATTACGCCTCGTTCTATTATGCTTTTATGTGTGTACACAGTTGGAATGGTTGCTTTACTGAGCAGTGTTAAATTTGTGTTTGGAATACCATGTATAATTGTATTACTAGTCTACAGATGGCGCCTGAAACATTTATCCGTGTATGATAATGTTGAAGATTTTCTACATAGTGACAATAACATTACGCCTATAAGGTACTCTTATAAAGACATAAAAAATATGACAAAACAATTCAAGATAAAATTAGGCAATGGAGGTTATGGATCTGTTTTCAAAGGACAACTTCGAAGTGGTCGCCTTGTTGCGGTTAAATTATTGGACAAAGCCAAGACCAGTGGACAAGATTTTATCAATGAAGTTTCTACAATTGGTAGGATTCACCATGTTAATGTGGTAGAACTGATTGGTTTTTGTGTGGAGGGGTCAAAACGAGCTCTTATATATGAATTCATGCCAAATGGATCACTAGAAAAATACATATTTTCTACAACAAAAGAGAGTTATTCTTTGAGTTGCGAAAAATTGTATGCCATTTCTTTTGGAGTGGCTCGAGGCATTGAGTACTTACATAATGGATGCAATATGAAAATTCTCCACTTTGATATAAAGCCTCATAACATCCTTCTTGACGAGAATTTTAATCCAAAACTTTCTGATTTTGGACTAGCTAGACTTTGTCCAACAGATAAAAGCATTGTGACATTAACTGCAGTAAGAGGAACCATTGGATATATGGCACCTGAATTGTTCTATCGGAATGTTGGCACAATATCTTACAAAGTTGATGTCTATAGTTTTGGGATGTTGTTAATGGAGATGGCAAGTAGAAGAAAGAACTTGAATGCATTGGCGGATCAATCTAGCCAAATATATTTTCCTTTTTGGATTTATGATCAGTTACATGATGGAAGGGAAGTAACAATTGAGAATGACACAGATCAAGAGATGAAATTGACAAAGAAAATGATGGTTGTGGCTTTGTGGTGTATACAGACAAAACCTGAGGACCGTCCTTCGATGAATAAAGTGTTGGAGATGCTTGAAGAAGAAGGTGAAGATATGCAAATTCCTAATAAGCCTTACTTTTGCCTACAGGATCAACCAGTTGCAGATGTTAAAGATGATGATATTGGCCGCTCATGGACTTCGTATGGTACAACAGTAAGTGATCCCAAGGAACCAACCTGA 1965 0.3684 MASSITLVMVAVLLILIFPPNKAYGSDEQQQLCSRRCGVHNISSPFRLKDSPENCGDTRYNLSCENNNQLILYDISYGRYYVQSINYNNFTIRLLDFNLVYSNYSLPPDYSLGLYNLSYTFPYLDYYQYKNGSYYTLAKSILFVSCPNHRMEYSYVGNCMNISSYSQYGNPFYVGAYSKSISELGLGDGCRIEFKYVTSWDLQDGNNNNTSCTDFRRMMLYGFELSWLNSLCKHGWFSHLDENSHVICHRVMYVLAGWVITPRSIMLLCVYTVGMVALLSSVKFVFGIPCIIVLLVYRWRLKHLSVYDNVEDFLHSDNNITPIRYSYKDIKNMTKQFKIKLGNGGYGSVFKGQLRSGRLVAVKLLDKAKTSGQDFINEVSTIGRIHHVNVVELIGFCVEGSKRALIYEFMPNGSLEKYIFSTTKESYSLSCEKLYAISFGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKLSDFGLARLCPTDKSIVTLTAVRGTIGYMAPELFYRNVGTISYKVDVYSFGMLLMEMASRRKNLNALADQSSQIYFPFWIYDQLHDGREVTIENDTDQEMKLTKKMMVVALWCIQTKPEDRPSMNKVLEMLEEEGEDMQIPNKPYFCLQDQPVADVKDDDIGRSWTSYGTTVSDPKEPT 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04515 654 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247
Vivi4g04515 654 PANTHER RUST RESISTANCE KINASE LR10-RELATED 307 624 IPR045874 GO:0004672
Vivi4g04515 654 Gene3D Transferase(Phosphotransferase) domain 1 410 618 - -
Vivi4g04515 654 FunFam PR5-like receptor kinase 410 618 - -
Vivi4g04515 654 FunFam serine/threonine-protein kinase PBS1-like 306 409 - -
Vivi4g04515 654 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Vivi4g04515 654 Pfam Protein kinase domain 339 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04515 654 MobiDBLite consensus disorder prediction 633 654 - -
Vivi4g04515 654 Gene3D Phosphorylase Kinase; domain 1 311 409 - -
Vivi4g04515 654 SMART serkin_6 335 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04515 654 ProSiteProfiles Protein kinase domain profile. 335 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04515 654 SUPERFAMILY Protein kinase-like (PK-like) 316 607 IPR011009 -
Vivi4g04515 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vivi4g04515 654 MobiDBLite consensus disorder prediction 639 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04515 Vivi-Chr4 172405097 172420597 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04515 282 634 Receptor kinase-like Gene Family AT5G38280 44.751 3.83e-102 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04515 Pkinase 7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04515 - - psat:127093935 886.33