Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04507 ATGGCATCATCCATAACCCTTGCCATGGTGGCAGTGTTACTAATACTAATAATACTTCCTTACAACAAAGTGTATGGTGGTTATGAACAACAACAAGAGTCGTGTTTTCGAAGGTGCGGTGTTCACAATATTACCCATCCTTTCCGACTGAAAGACAGTCCCAAGCACTGTGGTGACAAAAGGTACACCCTATCATGTGAGCTCAACAACGAGTTGATTTTGGACTATGGATCACACGGAAAATACTATGTACAATCCATTAATTACGACAACTTCACCATACGGCTATTGGATTTCAATCTTCGTTATTCTAATTATTCCACGGCTCCTTATTATCCATTAGGCTTCTATAATTTCACTTCAAGGGACAACTATCTAGAAAGCTTGCCGTACAGAGTGTATGGGGAGAACTTAAGATTATTGGTAAAAACTGTGTTATATGTACGCTGTCCAAGTAGTGTCCAAGATTCTTCTGATATCTACTTTAATGACGGTACTGCCCCTGCCTGTCTCAATATTACCGGTTCGTATGCGCAGCAAGGGAATTCTTCCTATGTCAATTATATTGAATCTGAACATCGTCACAATGTATTTGGAGGTCACAAAGATTTTTCTGAACTGGGATTGAGAGACGGGTGTCGCATAGAATTGATGTTTCTCACATCTTGGCCTCTTAAAGATAACACTCATGGTGGTAGCAACAACAACATTTCTTGTTCCGATATCAGTCTTATGATGTTTTATGGATTTGAACTTTCTTGGGTCACTAGTCTTTGTAAAGATGGCGAGTATGTATTCGACATTAATAATCACCGTAGCTGTGAAATTCCAGGGGTTCTTCCTTTTTTGATCTCGATTTACATAGGTATGATTATTTGTTTTCTTGGCGGTATTAAAATGGTTTTTGGAATGCCATGCATCATTGTATTACTAATCTACAAATGGCGACGAAAACATTTATCTATGTATGACAAAATTGAAGATTTTCTGCGAGGTGACAACAACATCATGCCTATTAGGTATTCTTATAAAGATATAAAAAAGATAACCCAGCAATTCAAGACAAAACTAGGTAATGGAGGTTATGGATCCGTTTTTAAAGGACAACTTCGAAGTGGTCGTCTTGTAGCAGTTAAATTATTAGATAATGCCAAGTCTAACGGTCAAGATTTTGTTAATGAAGTTGTTACCATAGGTAGGATTCACCATGTTAATGTTGTGCAACTCATTGGTTTTTGTATGGATGGGTCAAAACGTGCTCTTATATACGAGTTCATGCCAAATGGATCCCTTGAGAAATATATACATTCTCATATTGAAGAGAGACATTCCTTGAGTTGTGAAAAATTGTATTTCATTTCTCTTGGAGTGGCTAGAGGCATTGATTACTTGCATAATGGATGCAATATGAAAATTCTACACTTTGACATAAAGCCTCATAACATACTTCTCGACGAAAATTTCAATCCAAAAGTTTCTGATTTTGGATTAGCTAGACTTTATTCTACAGATAAAAGTATTGTGACATTAACTGCTGCAAGGGGAACCATTGGATACATGGCTCCCGAGCTATTCTACAGAAATGTTGGGACAATATCTTACAAAGCTGATGTTTATAGCTTTGGAATGTTGTTAATGGAGATGGCAAGTAGAAGAAAGAACTTGAATGCATTGGCTGATCACTCTAGCCAAATATATTTCCCTTTTTGGATTTATGACCAGTTACATGATGGAAGGGAAGTAACAATTGAGAATGACACAGATCAAGAGATGAAATTGGCAAAGAAAATGATGATTGTGGCTTTGTGGTGTATACAGACAAAACCTGAAGACCGTCCTTCTATGATTAAAGTGATGGAGATGCTTGAAGAAGAAGATGAAGATATGCAAATTCCTAATAAGCCTTACTTTTGCCTACAAGATCAACATTGCAGATGA 1938 0.37 MASSITLAMVAVLLILIILPYNKVYGGYEQQQESCFRRCGVHNITHPFRLKDSPKHCGDKRYTLSCELNNELILDYGSHGKYYVQSINYDNFTIRLLDFNLRYSNYSTAPYYPLGFYNFTSRDNYLESLPYRVYGENLRLLVKTVLYVRCPSSVQDSSDIYFNDGTAPACLNITGSYAQQGNSSYVNYIESEHRHNVFGGHKDFSELGLRDGCRIELMFLTSWPLKDNTHGGSNNNISCSDISLMMFYGFELSWVTSLCKDGEYVFDINNHRSCEIPGVLPFLISIYIGMIICFLGGIKMVFGMPCIIVLLIYKWRRKHLSMYDKIEDFLRGDNNIMPIRYSYKDIKKITQQFKTKLGNGGYGSVFKGQLRSGRLVAVKLLDNAKSNGQDFVNEVVTIGRIHHVNVVQLIGFCMDGSKRALIYEFMPNGSLEKYIHSHIEERHSLSCEKLYFISLGVARGIDYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLYSTDKSIVTLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMASRRKNLNALADHSSQIYFPFWIYDQLHDGREVTIENDTDQEMKLAKKMMIVALWCIQTKPEDRPSMIKVMEMLEEEDEDMQIPNKPYFCLQDQHCR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04507 645 ProSiteProfiles Protein kinase domain profile. 351 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04507 645 Gene3D Transferase(Phosphotransferase) domain 1 426 634 - -
Vivi4g04507 645 Pfam Protein kinase domain 353 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04507 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 323 635 IPR045874 GO:0004672
Vivi4g04507 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vivi4g04507 645 Pfam Wall-associated receptor kinase galacturonan-binding 35 98 IPR025287 GO:0030247
Vivi4g04507 645 FunFam PR5-like receptor kinase 426 634 - -
Vivi4g04507 645 FunFam serine/threonine-protein kinase PBS1-like 322 425 - -
Vivi4g04507 645 Gene3D Phosphorylase Kinase; domain 1 332 425 - -
Vivi4g04507 645 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Vivi4g04507 645 SMART serkin_6 351 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04507 645 SUPERFAMILY Protein kinase-like (PK-like) 335 623 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04507 Vivi-Chr4 172293035 172324828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04507 340 635 Receptor kinase-like Gene Family AT5G38280 50.166 2.17e-101 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04507 Pkinase 4.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04507 - - psat:127093935 803.897