Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04506 ATGGCATCATCCATAACCCTTGCCATGGTGGCAGTGTTACTAATACTAATAATACTTCCTTACAACAAAGTGTATGGTGGTTATGAACAACAACAAGAGTCGTGTTTTCGAAGGTGCGGTGTTCACAATATTACCCATCCTTTCCGACTGAAAGACAGTCCCAAGCACTGTGGTGACAAAAGGTACACCCTATCATGTGAGCTCAACAACGAGTTGATTTTGGACTATGGATCACACGGAAAATACTATGTACAATCCATTAATTACGACAACTTCACCATACGGCTATTGGATTTCAATCTTCGTTATTCTAATTATTCCACGGCTCCTTATTATCCATTAGGCTTCTATAATTTCACTTCAAGGGACAACTATCTAGAAAGCTTGCCGTACAGAGTGTATGGGGAGAACTTAAGATTATTGGTAAAAACTGTGTTATATGTACGCTGTCCAAGTAGTGTCCAAGATTCTTCTGATATCTACTTTAATGACGGTACTGCCCCTGCCTGTCTCAATATTACCGGTTCGTATGCGCAGCAAGGGAATTCTTCCTATGTCAATTATATTGAATCTGAACATCGTCACAATGTATTTGGAGGTCACAAAGATTTTTCTGAACTGGGATTGAGAGACGGGTGTCGCATAGAATTGATGTTTCTCACATCTTGGCCTCTTAAAGATAACACTCATGGTGGTAGCAACAACAACATTTCTTGTTCCGATATCAGTCTTATGATGTTTTATGGATTTGAACTTTCTTGGGTCACTAGTCTTTGTAAAGATGGCGAGTATGTATTCGACATTAATAATCACCGTAGCTGTGAAATTCCAGGGGTTCTTCCTTTTTTGATCTTGATTTACATAGGGGTTCTTCCTTTTTTGATCTCGATTTACATAGGTATGATTATTTGTTTTCTTGGCGGTATTAAAATGGTTTTTGGAATGCCATGCATCATTGTATTACTAATCTACAAATGGCGACGAAAACATTTATCTATGTATGACAAAATTGAAGATTTTCTGCGAGGTGACAACAACATCATGCCTATTAGGTATTCTTATAAAGATATAAAAAAGATAACCCAGCAATTCAAGACAAAACTAGGTAATGGAGGTTATGGATCCGTTTTTAAAGGACAACTTCGAAGTGGTCGTCTTGTAGCAGTTAAATTATTAGATAATGCCAAGTCTAACGGTCAAGATTTTGTTAATGAAGTTGTTACCATAGGTAGGATTCACCATGTTAATGTTGTGCAACTCATTGGTTTTTGTATGGATGGGTCAAAACGTGCTCTTATATACGAGTTCATGCCAAATGGATCCCTTGAGAAATATATACATTCTCATATTGAAGAGAGACATTCCTTGAGTTGTGAAAAATTGTATTTCATTTCTCTTGGAGTGGCTAGAGGCATTGATTACTTGCATAATGGATGCAATATGAAAATTCTACACTTTGACATAAAGCCTCATAACATACTTCTCGACGAAAATTTCAATCCAAAAGTTTCTGATTTTGGATTAGCTAGACTTTATTCTACAGATAAAAGTATTGTGACATTAACTGCTGCAAGGGGAACCATTGGATACATGGCTCCCGAGCTATTCTACAGAAATGTTGGGACAATATCTTACAAAGCTGATGTTTATAGCTTTGGAATGTTGTTAATGGAGATGGCAAGTAGAAGAAAGAACTTGAATGCATTGGCTGATCACTCTAGCCAAATATATTTCCCTTTTTGGATTTATGACCAGTTACATGATGGAAGGGAAGTAACAATTGAGAATGACACAGATCAAGAGATGAAATTGGCAAAGAAAATGATGATTGTGGCTTTGTGGTGTATACAGACAAAACCTGAAGACCGTCCTTCTATGATTAAAGTGATGGAGATGCTTGAAGAAGAAGATGAAGATATGCAAATTCCTAATAAGCCTTACTTTTGCCTACAAGATCAACATTGCAGATGA 1971 0.3694 MASSITLAMVAVLLILIILPYNKVYGGYEQQQESCFRRCGVHNITHPFRLKDSPKHCGDKRYTLSCELNNELILDYGSHGKYYVQSINYDNFTIRLLDFNLRYSNYSTAPYYPLGFYNFTSRDNYLESLPYRVYGENLRLLVKTVLYVRCPSSVQDSSDIYFNDGTAPACLNITGSYAQQGNSSYVNYIESEHRHNVFGGHKDFSELGLRDGCRIELMFLTSWPLKDNTHGGSNNNISCSDISLMMFYGFELSWVTSLCKDGEYVFDINNHRSCEIPGVLPFLILIYIGVLPFLISIYIGMIICFLGGIKMVFGMPCIIVLLIYKWRRKHLSMYDKIEDFLRGDNNIMPIRYSYKDIKKITQQFKTKLGNGGYGSVFKGQLRSGRLVAVKLLDNAKSNGQDFVNEVVTIGRIHHVNVVQLIGFCMDGSKRALIYEFMPNGSLEKYIHSHIEERHSLSCEKLYFISLGVARGIDYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLYSTDKSIVTLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMASRRKNLNALADHSSQIYFPFWIYDQLHDGREVTIENDTDQEMKLAKKMMIVALWCIQTKPEDRPSMIKVMEMLEEEDEDMQIPNKPYFCLQDQHCR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04506 656 FunFam serine/threonine-protein kinase PBS1-like 333 436 - -
Vivi4g04506 656 SMART serkin_6 362 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04506 656 Pfam Wall-associated receptor kinase galacturonan-binding 35 98 IPR025287 GO:0030247
Vivi4g04506 656 FunFam PR5-like receptor kinase 437 645 - -
Vivi4g04506 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Vivi4g04506 656 PANTHER RUST RESISTANCE KINASE LR10-RELATED 334 646 IPR045874 GO:0004672
Vivi4g04506 656 Gene3D Phosphorylase Kinase; domain 1 343 436 - -
Vivi4g04506 656 Gene3D Transferase(Phosphotransferase) domain 1 437 645 - -
Vivi4g04506 656 Pfam Protein kinase domain 364 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04506 656 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Vivi4g04506 656 ProSiteProfiles Protein kinase domain profile. 362 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04506 656 SUPERFAMILY Protein kinase-like (PK-like) 346 634 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04506 Vivi-Chr4 172293034 172324829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04506 351 646 Receptor kinase-like Gene Family AT5G38280 50.166 3.01e-101 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04506 Pkinase 4.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04506 - - psat:127093935 894.804