Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04492 ATGTTAGCGTCCACAACCCCAATCCTAACACCCTCCTCCAACCTCAAACCTTCCCACTTCACACCCTCAATCACATCCAGAGTCACATTCCTTCAATCTTCTTCCTCTTTCAAACCACACTCAAAACTCCCCCTATTCGTCAGGTTCAGTCGTAGCACCAATAGTAACGGTTCTCCTGACCCCGCCGTCGGTCCCGCTTCTCCGGGAATTGATGAAGTAGAAGGTGAATCATCGTCTGACTTTGGTGATAGCTATGTGGCCTTGTTTGTTCGTATGCTAGGCCTAGATAACAACCCTCTTGATAGAGAACATGCTATAGTTACTCTTGGGCAATACTCACTTGGTGGAAAGAAGTGTATTGACAATATAATGCAATTTCCTGGCTGTATTAATCTTGTTGTGAATCTCCTTAGATCGGAGTCAAGTTCGTCGTCCGAGGCTGCTGCAGGCCTTTTGCGATCGATATCTTCTATTGATCTCTATAGGGATTCGGTAGCAGATAGTGGAGCTATAGAAGAGATAAATAGATTGCTAGCACAATCCTCCTTGGGTTCTGAGGTGAAGGTGCGGAGTTTGAATACCCTGAGGAACTTATTGGTTGACGAGAAGCTCCGCGTTAAACTTGCAAAGAGTGATATTCTTTTGTTGGCTATTAAGTACCTTGATGATGAGGATGTAAAGGTGAAGGAAGCTGCTGGGGGTGTTTTGGCAAATTTAGCGTTGAGCCGTGAAAACCACGATATCATGGTTGAAGCAGGTGTTATTCCAAAATTGGCAAAATTCTTAACATCTTACTCTGAAGGATCTCAAGTCATTACAAAGGAAGCAAAGAAAGCATTGCTGGAACTTGTGAAGGACGACTACTACAGAATTCTTGTTATTGAAGAAGGTTTAGTTCCTGTGCCGTTAATAGGTGCTTCAGCCTATAAGTCATACACCCCACCTTTATATGAACCACTCGCATTTCCGGATGGTACAGAAATTGAAAAGACATATACAAAACCTTCCAGATATGGTGCAGAATTTCTTGTCGGATTAAATGTTGATAAGAATGCTGACATAGATGAAGCAAAAGCCAATGCAATGATTGGACAGGCACAACAGCGATTCCTTGTTCGTATTGGCGTCGTAGAAAATGGAGAAACGGCATCTCATTCTGAATATTCAGATGATCAGCCGCGTCTTACACTTTTACCTTGGATTGGTGGTGTTGCTCGTTTAGTACTGATACTAGAACTAGAAGATAAGTCAGCAATCCTAAGAGCTGCAAAGTCAATTGCTAGTGCTTGTATCAATGAACATATGCGTATTGCATTCAAGGAGGCTGGTGCAGTAAAGCAATTACTACGGCTTTTGAGTTGCCATGATGATGCAGTCCAGCTGGCAGCGACTCAAGCTTTGGAAAAGCTGTCTGCTAGCAACATTGTTTGTCGCGTAATTGAATCCAAGGGCGGTTTGGGTCCTTTAGTTAATATTTTAAAATGCTCAGACATAGGTGGAGCTATTGTGGAAAAGTCTTTGAACGTACTTGCTCAGATATTAGACCCCAATAAAGAGATGCAGTTGAAGTTTTATGATGGATCAGTTAATGAATCTGAGAAGGAATTTGGTGGAGTAAGAAATGATAGTTCAACGGGATTAAGTAGCACCAACTCTGAGCAAGCCGTATCGAAAATAAACCCAAGGAACGATATACTGGACTCAGTTTTCATTGCACGCCTTGTTGAGATTTTAAAGTCATCTTCACCCAGTTTACAAGAGAAGGCTGCTTCTGTTCTAGAGTTTGTGGCTTTGACAGACCCAACACTGACTCCGATTATATCCGTGGATATTGAAAATGGCCTCAGTTCTACGTTTCAGCAAAATTTCTTGAAAATTTCGGCAGACATGGAATCTGATGCAGAAGATCAGTTTTCAGCAGCATATGCTATTAAACTTGAAGAAGCTGGCCTTGCAATATCTGCAGCTTCCCGGTTACTGACAAGACTGCTCGACTCTCGGCAGTTTCGCGACAAAATAAATTTCTCCAGTTTCATTGATACGCTCCGCAAAATTCTCAAGTCCAATATTCCTCTCCGCAGCAAAGATTGGGTAGCTGCTTGCCTAGTTAAACTAAGTTCTCTATCTGGTTACGACACAAGTTCTAATCCAATCAATGTCGAAGTTACCCTTTATGAGACGATTCCAAGACTTGTAGAACAGATCAAAACATCATCCTCTTTAGAAGCTCAGGAAAATGCTGCTGTCGAACTAAATAGAATAGTATCCAAAGGGGTGGTAGATTCCACAGGAGCTATTATTTCTCTAGCGGCGGTGAATCCGTTGGTGAAGCTGATTGAAGAAGGCAGTGAAAGAGGCATTGAAGCAAGCTTGACAATACTGTATAATCTGAGTATGGATAGTGAGAACCATTCAGCAATTATAGCTGCTGGAGCAGTCCCAGCTTTAAGAAGAATTGTTCTGTCAGAAAAACCACAGTGGCAAAGGGCACTTCATTTGCTCAGGAGTTTGCAGATATGA 2520 0.4226 MLASTTPILTPSSNLKPSHFTPSITSRVTFLQSSSSFKPHSKLPLFVRFSRSTNSNGSPDPAVGPASPGIDEVEGESSSDFGDSYVALFVRMLGLDNNPLDREHAIVTLGQYSLGGKKCIDNIMQFPGCINLVVNLLRSESSSSSEAAAGLLRSISSIDLYRDSVADSGAIEEINRLLAQSSLGSEVKVRSLNTLRNLLVDEKLRVKLAKSDILLLAIKYLDDEDVKVKEAAGGVLANLALSRENHDIMVEAGVIPKLAKFLTSYSEGSQVITKEAKKALLELVKDDYYRILVIEEGLVPVPLIGASAYKSYTPPLYEPLAFPDGTEIEKTYTKPSRYGAEFLVGLNVDKNADIDEAKANAMIGQAQQRFLVRIGVVENGETASHSEYSDDQPRLTLLPWIGGVARLVLILELEDKSAILRAAKSIASACINEHMRIAFKEAGAVKQLLRLLSCHDDAVQLAATQALEKLSASNIVCRVIESKGGLGPLVNILKCSDIGGAIVEKSLNVLAQILDPNKEMQLKFYDGSVNESEKEFGGVRNDSSTGLSSTNSEQAVSKINPRNDILDSVFIARLVEILKSSSPSLQEKAASVLEFVALTDPTLTPIISVDIENGLSSTFQQNFLKISADMESDAEDQFSAAYAIKLEEAGLAISAASRLLTRLLDSRQFRDKINFSSFIDTLRKILKSNIPLRSKDWVAACLVKLSSLSGYDTSSNPINVEVTLYETIPRLVEQIKTSSSLEAQENAAVELNRIVSKGVVDSTGAIISLAAVNPLVKLIEEGSERGIEASLTILYNLSMDSENHSAIIAAGAVPALRRIVLSEKPQWQRALHLLRSLQI 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04492 839 Gene3D - 82 311 IPR011989 -
Vivi4g04492 839 SMART arm_5 201 241 IPR000225 GO:0005515
Vivi4g04492 839 SMART arm_5 158 200 IPR000225 GO:0005515
Vivi4g04492 839 SMART arm_5 800 836 IPR000225 GO:0005515
Vivi4g04492 839 SMART arm_5 714 756 IPR000225 GO:0005515
Vivi4g04492 839 SMART arm_5 116 157 IPR000225 GO:0005515
Vivi4g04492 839 SMART arm_5 557 598 IPR000225 GO:0005515
Vivi4g04492 839 SMART arm_5 432 472 IPR000225 GO:0005515
Vivi4g04492 839 SMART arm_5 242 285 IPR000225 GO:0005515
Vivi4g04492 839 SMART arm_5 759 799 IPR000225 GO:0005515
Vivi4g04492 839 SUPERFAMILY ARM repeat 393 602 IPR016024 -
Vivi4g04492 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 443 485 IPR000225 GO:0005515
Vivi4g04492 839 MobiDBLite consensus disorder prediction 535 554 - -
Vivi4g04492 839 Pfam Armadillo/beta-catenin-like repeat 432 471 IPR000225 GO:0005515
Vivi4g04492 839 SUPERFAMILY ARM repeat 558 828 IPR016024 -
Vivi4g04492 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 770 812 IPR000225 GO:0005515
Vivi4g04492 839 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 16 838 - -
Vivi4g04492 839 SUPERFAMILY ARM repeat 89 305 IPR016024 -
Vivi4g04492 839 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 169 198 IPR000225 GO:0005515
Vivi4g04492 839 MobiDBLite consensus disorder prediction 53 78 - -
Vivi4g04492 839 Gene3D - 629 838 IPR011989 -
Vivi4g04492 839 Gene3D - 384 614 IPR011989 -
Vivi4g04492 839 MobiDBLite consensus disorder prediction 539 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04492 Vivi-Chr4 172126439 172130664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04492 117 301 U-box Gene Family AT2G23140 28.342 4.48e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04492 - - gmx:100810447 1028.08