Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04490 ATGAGCAAATCCAAAAATTTCTTTCATAATCTCATTAAGCCCTTCAAATTTGGTTCCACCAGAGAGGGAAGAAGCGAAGACGATATACAGAACATAGCTACACAGGAACAAAGAACATTTTCCTATGAAACATTGGTTGCTGCTACCAACAATTTTCAACCTTCTAACAAACTTGGAGAGGGAGGATTTGGACCTGTCTTTAAGGGTAAATTGAATGATGGAAGAGAGATAGCAGTGAAGAAGCTATCACATGGTTCAAATCAAGGGAAGACACAGTTTGTTGCGGAGGCCAAGTTGTTGACTCGTGTGCAGCATCGTAATGTGGTGAATTTGTTTGGTTATTGTATCCATGGAAGAGAGAAGCTTCTTGTGTATGAGTATGTCCCTCGTGAGAGCCTTGACAAGTTCCTATTCAGATCAAAAAAGAAGGAAGGGCTAGATTGGAAACGTAGATTTGACATAATCAATGGAGTGGCAAGAGGTTTACTTTATCTTCATGAAGACTCTCACAACTGCATAATCCATCGTGACATAAAAGCAGCCAACATTTTACTTGACGAAAAATGGGTCCCTAAGATTGCTGACTTTGGCTTGGCTCGTCTCTTTCCAGAAGATGAAACTCATGTCAATACACGTGTGGCTGGAACCCATGGATACATGGCTCCGGAGTACTTGATGCATGGACACTTATCTGTGAAGGCAGATGTGTATAGCTATGGAGTTTTGGTGTTGGAGTTGATTACTGGCCATCGAAACTCATCCTCTGATCCGGCCTTCCAAGGAGACAATCTCCTTAATTGGGCATACAAGCTATACAAGAAAGGGAGGTGGTTAGAAATGGTAGATCCTACAGTAGCATCTTCTGTGGAGATAACCGAACAAGTGGAAGTGTGCATTCGAGGGAGTCTGTTGTGCACACAAGGAGATCCACAACTTCGTCCAACGATGGCGCGTGTGGTGTTGATGTTGTCAAAGAAGCCACCAAGTCACATGGAAGAGCCAACAAGACCGGGTATACCTGGTTCTAGATACAGAAGAACAGTACCTCGCAGTCGCACCCCTTTTACTACTGATGACGAGAATGACTCCTCTGCTTCACACGTTGATTCAAGCAATTATGACACTACTATTGCTACTACTACAGCTACGAGTTCTACTTCTTCTGCAACAAGAACAAGAACAAGCTCTGCAACTGCACGAGCAGATTTGCGAGGGAAACGTCCAATGCTATCTTCATGA 1239 0.4334 MSKSKNFFHNLIKPFKFGSTREGRSEDDIQNIATQEQRTFSYETLVAATNNFQPSNKLGEGGFGPVFKGKLNDGREIAVKKLSHGSNQGKTQFVAEAKLLTRVQHRNVVNLFGYCIHGREKLLVYEYVPRESLDKFLFRSKKKEGLDWKRRFDIINGVARGLLYLHEDSHNCIIHRDIKAANILLDEKWVPKIADFGLARLFPEDETHVNTRVAGTHGYMAPEYLMHGHLSVKADVYSYGVLVLELITGHRNSSSDPAFQGDNLLNWAYKLYKKGRWLEMVDPTVASSVEITEQVEVCIRGSLLCTQGDPQLRPTMARVVLMLSKKPPSHMEEPTRPGIPGSRYRRTVPRSRTPFTTDDENDSSASHVDSSNYDTTIATTTATSSTSSATRTRTSSATARADLRGKRPMLSS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04490 412 CDD STKc_IRAK 58 325 - -
Vivi4g04490 412 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 377 - -
Vivi4g04490 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vivi4g04490 412 Gene3D Phosphorylase Kinase; domain 1 16 127 - -
Vivi4g04490 412 ProSiteProfiles Protein kinase domain profile. 52 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04490 412 SMART serkin_6 52 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04490 412 Gene3D Transferase(Phosphotransferase) domain 1 128 335 - -
Vivi4g04490 412 MobiDBLite consensus disorder prediction 325 412 - -
Vivi4g04490 412 MobiDBLite consensus disorder prediction 366 399 - -
Vivi4g04490 412 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Vivi4g04490 412 Pfam Protein tyrosine and serine/threonine kinase 55 320 IPR001245 GO:0004672|GO:0006468
Vivi4g04490 412 SUPERFAMILY Protein kinase-like (PK-like) 36 346 IPR011009 -
Vivi4g04490 412 FunFam Cysteine-rich receptor-like protein kinase 2 128 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04490 Vivi-Chr4 172106567 172110741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04490 32 339 Receptor kinase-like Gene Family AT4G11530 50.968 3.40e-106 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi4g04490 PK_Tyr_Ser-Thr 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04490 - - gmx:100811523 583.563