Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04481 ATGGAAAGAGATTTCTTGAGTCTATGCTCAAACCAAGAAATTAACAATGAAGCTTCCAAAGACTCAGGATTAAGAAAAGTTTCAGCAGTAAAATGGCCTTATTTTAACAAAGTCTCGGCTCATCCATATTCGATGCCTTTTAATGTTTCTGAAGAAGATAAGGTGAAAATGACATCTGGTTTCATAGAGAAATCTTTCAAACATGACGGCCAAGATGGCGTTCATTTTTCCGTGAATCCGTATCCTGTACACCATGATGTGAATCGTGCTCATGACATGAAGATGTTTTCAGTTTCCAATCAAGCAATTTCAGTTCCCGCAGGACATCTGTTCCTTAAGAATCATTTTGCAACTGTTGGTCAGAATATGAATGGTGCTAATGTGAAGCAACCAATACGTGCGGGATCACCATTAACTGCACCTCATTCAGGGCTTCCAAGGGTTGGCGCCGTTGCTGGTTTGGTTGAATGTGTAAAACCATCTGCACCTGCTCCTCAACTTACCATGTTCTATGCTGGCACTGTGAACATCTTCAAAGATATCACTCCCGAGCAGGTACATGCCATCATGTTGTTGGCTGGAAATGGCGTATCAGCAGCGTCAAACATGGCTCAATCTGAAGTTCAGGCACCTAGCTCAAAGTTTGCATCAGATGATCATGGCGTGCCTATGAGTCCACCTGTAAATATACCACCCATCTCTGCTATTTCAAGTCCTTTATCTGTTTCTTCACATACTGGTCCACAATCAGGGAGTGGCTCAGTTTGCAGTGATGAATTTTTGACTGCTAAAGCATCTAGAGGCCCTACTCCTACCACCTCTGCTAGCAAAGTGGAGACTCCAAAAGTAGTCAATGCAACCACCATGTTTTCATCAGCTATACCGCAGGCTCGCAAAGCATCATTGGCTCGATTTTTGGAAAAGCGCAAGGAAAGGGTGATGAGTGCAGCACCTTATAACATCAACAAGAAATCTGAGGATGCACCATCATTGAATTCAATGGCTGCTAACATCTCCGCAACTACTGGTACTAGTACGCTGTTATTGAAACAAGGATAA 1059 0.4287 MERDFLSLCSNQEINNEASKDSGLRKVSAVKWPYFNKVSAHPYSMPFNVSEEDKVKMTSGFIEKSFKHDGQDGVHFSVNPYPVHHDVNRAHDMKMFSVSNQAISVPAGHLFLKNHFATVGQNMNGANVKQPIRAGSPLTAPHSGLPRVGAVAGLVECVKPSAPAPQLTMFYAGTVNIFKDITPEQVHAIMLLAGNGVSAASNMAQSEVQAPSSKFASDDHGVPMSPPVNIPPISAISSPLSVSSHTGPQSGSGSVCSDEFLTAKASRGPTPTTSASKVETPKVVNATTMFSSAIPQARKASLARFLEKRKERVMSAAPYNINKKSEDAPSLNSMAANISATTGTSTLLLKQG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04481 352 ProSiteProfiles Tify domain profile. 160 195 IPR010399 -
Vivi4g04481 352 Pfam tify domain 163 194 IPR010399 -
Vivi4g04481 352 Pfam Jas motif 295 319 IPR018467 -
Vivi4g04481 352 SMART tify_2 160 195 IPR010399 -
Vivi4g04481 352 MobiDBLite consensus disorder prediction 209 256 - -
Vivi4g04481 352 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 109 326 IPR040390 -
Vivi4g04481 352 MobiDBLite consensus disorder prediction 234 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04481 Vivi-Chr4 172038845 172042195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04481 30 325 Tify Gene Family AT3G17860 34.783 2.28e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi4g04481 tify 1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04481 K13464 - qsa:O6P43_032516 348.206