Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04444 ATGGCAGATCGCGGAGGAGCTCCAGCTGGTGATCGTGGTGGTTTTGGCAGAGGATTTGGAGGAAGAGGTGGCGGACGTGGCGGAGATAGGGGAAGAGGCCGTCGTAGATCGGGAGGCCGACGTGAAGAAGAAGAAAAATGGGTTCCCGTCACCAAACTAGGCCGTCTCGTGAAAGAAGGCAAAATCCGCAGCCTCGAGCAGATCTACCTCCACTCTCTTCCCATCAAGGAGCACCAAATCATCGACACACTCGTTGGTCCAACTCTGAAAGACGAAGTGATGAAAATCATGCCGGTTCAGAAGCAGACCAGAGCCGGTCAACGAACCCGGTTCAAGGCTTTTGTTGTCGTTGGTGATAACAATGGGCACGTTGGGCTTGGGGTGAAGTGTAGTAAGGAGGTTGCTACTGCGATTCGCGGTGCGATTATTCTTGCGAAGCTTTCGGTGATTCCGGTGAGGAGAGGGTATTGGGGGAATAAGATTGGGAAGCCGCATACTGTTCCATGTAAGGTTACTGGGAAATGTGGATCTGTTACTGTTAGGATGGTTCCGGCGCCTCGTGGTTCGGGGATTGTGGCGGCTAGGGTTCCTAAGAAGGTTTTGCAGTTTGCTGGGATTGATGATGTTTTTACTTCCTCTAGAGGATCTACCAAAACCCTCGGCAATTTCGTCAAGGCTACTTTTGACTGTCTGCTGAAAACCTATGGTTTCTTGACACCTGAATTCTGGAAAGAGACTCGCTTCAGTAAATCTCCATTCCAAGAATACACAGATCTATTGGCCAAGCCAACAGGAAAGACCTTGATCTTGGAGGAAGAGAGGGTTGAAGCTTGA 834 0.5036 MADRGGAPAGDRGGFGRGFGGRGGGRGGDRGRGRRRSGGRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTGKTLILEEERVEA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04444 277 Pfam Ribosomal protein S5, N-terminal domain 89 153 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi4g04444 277 PANTHER RIBOSOMAL S SUBUNIT 40 235 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi4g04444 277 ProSitePatterns Ribosomal protein S5 signature. 106 138 IPR018192 -
Vivi4g04444 277 Gene3D - 46 151 - -
Vivi4g04444 277 Gene3D - 152 245 IPR014721 -
Vivi4g04444 277 FunFam 40S ribosomal protein S2 152 245 - -
Vivi4g04444 277 SUPERFAMILY dsRNA-binding domain-like 85 154 - -
Vivi4g04444 277 FunFam 40S ribosomal protein S2 46 151 - -
Vivi4g04444 277 NCBIfam 30S ribosomal protein S5 42 249 IPR005711 GO:0003735|GO:0006412|GO:0015935
Vivi4g04444 277 SUPERFAMILY Ribosomal protein S5 domain 2-like 165 245 IPR020568 -
Vivi4g04444 277 MobiDBLite consensus disorder prediction 1 45 - -
Vivi4g04444 277 MobiDBLite consensus disorder prediction 27 45 - -
Vivi4g04444 277 Pfam Ribosomal protein S5, C-terminal domain 173 245 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vivi4g04444 277 ProSiteProfiles S5 double stranded RNA-binding domain profile. 89 152 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04444 Vivi-Chr4 171301226 171303167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04444 43 265 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 91.928 6.73e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04444 K02981 - gmx:100797105 480.33