Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04435 ATGGCTCGAGAGATCGAAACTGGTGAAATTGTTGCTCTCAAGAAAATACGTATGGACAACGAGAGAGAAGGGTTTCCAATAACTGCTATACGGGAAATCAAAATTCTGAAGAAACTACATCATGAAAATGTAATCAAATTGAAGGAAATCGTCACATCTCCAGGTCCTGAGAAAGATGATCAAGGGAGGCCAGATGGCAACAAATATAAAGGTGGCATATATATGGTCTTCGAATATATGGACCACGATTTAACAGGTCTCGCAGACCGACCTGGCATGAGGTTTACTGTCCCCCAGATCAAGTGTTACATGAGGCAGCTCTTGACTGGACTTCATTATTGTCATGTCAATCAAGTGCTTCACCGTGATATCAAAGGATCAAATCTTCTCATAGATAATGAAGGTAATCTGAAACTGGCAGATTTTGGATTGGCACGGTCATTTTCGAATGAGCATAATGCAAACCTTACAAATCGAGTCATCACTTTATGGTACAGACCCCCCGAGTTACTATTGGGGACTACAAGGTATGGGCCAGCTGTAGACATGTGGTCTGTTGGGTGCATTTTCGCCGAGCTTCTTCACGGGAAGCCCATCTTTCCTGGAAAAGATGAGCCAGAGCAATTAAATAAGATTTTTGAGCTTTGTGGAACACCTGATGAGGTGAATTGGCCAGGAGTTCAAAAGATTCCTTGGTACAATCAGTTTAAGCCGTCAAGACCGATGAAAAGGCGTCTGAGGGATGTTTTCAGACACTTTGATCGTCATGCGTTGGAGTTGTTGGAGAAGATGCTCACACTTGATCCAGCTCAGAGAATTCCTGCGAAGGACGCACTTGACGCCGAGTACTTCTGGACTGATCCTTTACCATGTGATCCCAAGAGTTTACCCAAGTATGAGTCCTCACATGAGTTTCAGACCAAGAAAAAGCGTCAGCAACAACGGCAAAATGAAGAAAATGCCAAGCGTCTTAAAATGCAGCACCCACAGCAGCATACCCGTCTTCCCCCGATTCAGCAGGGTGGACAACATGCCCAAATGCGGCAAGGTCCTTCCCACTCTATTCACAGTTCTCAACCAGCAGTTGCTGCAGGACCTAGTCATCATTATGGTAAGCCTCGAGGTCCCTCTGGTGGTCCAGGAAGATATCCTGGTGGGAACCCTAGTGGGGGATACAATCACCCAAACCGTGGAGGTCAAACTGGGGGTGCTGGTTATGGCAGTGGACCGTATCCTCCTCAAGGACGGGGGGCGCCTTATGGGTCTAGTGGAATGCCGGCAGGACCCGGTGGTCCTCGTGGTGGAGGTGGAAGTGGCTATGGAGTTGGAGCTCCAAATTATCCTCCTCAAGGTGGTCCTCCATATGGTGGATCGGCTGCTGGTCGTGGGTCAAACATGGGTGGGAATCGCAATCAACAGTATGGTTGGCAGCAGTGA 1437 0.476 MAREIETGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDDQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGTPDEVNWPGVQKIPWYNQFKPSRPMKRRLRDVFRHFDRHALELLEKMLTLDPAQRIPAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEENAKRLKMQHPQQHTRLPPIQQGGQHAQMRQGPSHSIHSSQPAVAAGPSHHYGKPRGPSGGPGRYPGGNPSGGYNHPNRGGQTGGAGYGSGPYPPQGRGAPYGSSGMPAGPGGPRGGGGSGYGVGAPNYPPQGGPPYGGSAAGRGSNMGGNRNQQYGWQQ 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04435 478 CDD STKc_CDK9_like 1 284 - -
Vivi4g04435 478 ProSiteProfiles Protein kinase domain profile. 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04435 478 Gene3D Transferase(Phosphotransferase) domain 1 82 324 - -
Vivi4g04435 478 MobiDBLite consensus disorder prediction 295 478 - -
Vivi4g04435 478 MobiDBLite consensus disorder prediction 332 361 - -
Vivi4g04435 478 MobiDBLite consensus disorder prediction 297 326 - -
Vivi4g04435 478 Pfam Protein kinase domain 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04435 478 SMART serkin_6 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04435 478 PANTHER CELL DIVISION PROTEIN KINASE 2 290 - -
Vivi4g04435 478 FunFam Cyclin-dependent kinase C-2 82 324 - -
Vivi4g04435 478 MobiDBLite consensus disorder prediction 464 478 - -
Vivi4g04435 478 SUPERFAMILY Protein kinase-like (PK-like) 2 292 IPR011009 -
Vivi4g04435 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vivi4g04435 478 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04435 Vivi-Chr4 171188488 171192177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04435 1 478 Core Cell Cycle Gene Families AT5G10270 76.240 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi4g04435 Pkinase 1.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04435 K08819 - gmx:100793565 811.986