Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04434 ATGGCTTCGAATTCGGGGTTTGAGCGTGTAATGGCACTGGCAGCCCCGGGGCAACTGAACGTGATTGAATCGCCTTCACGGGGATCCCGAAGCGTTGATTGCTTTGAAAAATTAGAGCAAATTGGTGAAGGAACTTATGGTCAGGTTTACATGGCTCGAGAGATCGAAACTGGTGAAATTGTTGCTCTCAAGAAAATACGTATGGACAACGAGAGAGAAGGGTTTCCAATAACTGCTATACGGGAAATCAAAATTCTGAAGAAACTACATCATGAAAATGTAATCAAATTGAAGGAAATCGTCACATCTCCAGGTCCTGAGAAAGATGATCAAGGGAGGCCAGATGGCAACAAATATAAAGGTGGCATATATATGGTCTTCGAATATATGGACCACGATTTAACAGGTCTCGCAGACCGACCTGGCATGAGGTTTACTGTCCCCCAGATCAAGTGTTACATGAGGCAGCTCTTGACTGGACTTCATTATTGTCATGTCAATCAAGTGCTTCACCGTGATATCAAAGGATCAAATCTTCTCATAGATAATGAAGGTAATCTGAAACTGGCAGATTTTGGATTGGCACGGTCATTTTCGAATGAGCATAATGCAAACCTTACAAATCGAGTCATCACTTTATGGTACAGACCCCCCGAGTTACTATTGGGGACTACAAGGTATGGGCCAGCTGTAGACATGTGGTCTGTTGGGTGCATTTTCGCCGAGCTTCTTCACGGGAAGCCCATCTTTCCTGGAAAAGATGAGCCAGAGCAATTAAATAAGATTTTTGAGCTTTGTGGAACACCTGATGAGGTGAATTGGCCAGGAGTTCAAAAGATTCCTTGGTACAATCAGTTTAAGCCGTCAAGACCGATGAAAAGGCGTCTGAGGGATGTTTTCAGACACTTTGATCGTCATGCGTTGGAGTTGTTGGAGAAGATGCTCACACTTGATCCAGCTCAGAGAATTCCTGCGAAGGACGCACTTGACGCCGAGTACTTCTGGACTGATCCTTTACCATGTGATCCCAAGAGTTTACCCAAGTATGAGTCCTCACATGAGTTTCAGACCAAGAAAAAGCGTCAGCAACAACGGCAAAATGAAGAAAATGCCAAGCGTCTTAAAATGCAGCACCCACAGCAGCATACCCGTCTTCCCCCGATTCAGCAGGGTGGACAACATGCCCAAATGCGGCAAGGTCCTTCCCACTCTATTCACAGTTCTCAACCAGCAGTTGCTGCAGGACCTAGTCATCATTATGGTAAGCCTCGAGGTCCCTCTGGTGGTCCAGGAAGATATCCTGGTGGGAACCCTAGTGGGGGATACAATCACCCAAACCGTGGAGGTCAAACTGGGGGTGCTGGTTATGGCAGTGGACCGTATCCTCCTCAAGGACGGGGGGCGCCTTATGGGTCTAGTGGAATGCCGGCAGGACCCGGTGGTCCTCGTGGTGGAGGTGGAAGTGGCTATGGAGTTGGAGCTCCAAATTATCCTCCTCAAGGTGGTCCTCCATATGGTGGATCGGCTGCTGGTCGTGGGTCAAACATGGGTGGGAATCGCAATCAACAGTATGGTTGGCAGCAGTGA 1587 0.4776 MASNSGFERVMALAAPGQLNVIESPSRGSRSVDCFEKLEQIGEGTYGQVYMAREIETGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDDQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGTPDEVNWPGVQKIPWYNQFKPSRPMKRRLRDVFRHFDRHALELLEKMLTLDPAQRIPAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEENAKRLKMQHPQQHTRLPPIQQGGQHAQMRQGPSHSIHSSQPAVAAGPSHHYGKPRGPSGGPGRYPGGNPSGGYNHPNRGGQTGGAGYGSGPYPPQGRGAPYGSSGMPAGPGGPRGGGGSGYGVGAPNYPPQGGPPYGGSAAGRGSNMGGNRNQQYGWQQ 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04434 528 CDD STKc_CDK9_like 35 334 - -
Vivi4g04434 528 MobiDBLite consensus disorder prediction 382 411 - -
Vivi4g04434 528 MobiDBLite consensus disorder prediction 347 376 - -
Vivi4g04434 528 FunFam Cyclin-dependent kinase C-2 132 374 - -
Vivi4g04434 528 MobiDBLite consensus disorder prediction 514 528 - -
Vivi4g04434 528 SUPERFAMILY Protein kinase-like (PK-like) 30 342 IPR011009 -
Vivi4g04434 528 Gene3D Transferase(Phosphotransferase) domain 1 132 374 - -
Vivi4g04434 528 ProSitePatterns Protein kinases ATP-binding region signature. 41 64 IPR017441 GO:0005524
Vivi4g04434 528 ProSiteProfiles Protein kinase domain profile. 35 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04434 528 SMART serkin_6 35 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04434 528 Pfam Protein kinase domain 35 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04434 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vivi4g04434 528 PANTHER CELL DIVISION PROTEIN KINASE 33 340 - -
Vivi4g04434 528 MobiDBLite consensus disorder prediction 345 528 - -
Vivi4g04434 528 FunFam Cyclin-dependent kinase C-2 22 131 - -
Vivi4g04434 528 Gene3D Phosphorylase Kinase; domain 1 23 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04434 Vivi-Chr4 171187905 171192177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04434 11 528 Core Cell Cycle Gene Families AT5G10270 76.381 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi4g04434 Pkinase 1.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04434 K08819 - gmx:100793565 884.404