Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04430 ATGAATCAACGGCACCATCCCCCACCGCTTAACTCCTCCAAAACTCCACCCTCTGCGGTGGCGCCAGATTCACCTCCGCAACACGTCATCACCAATCGCAAAGACACTGTCCGGGAGAGGAGTGAGGTGGAATCTCATGATCCAACTGTTGCTAGGAAAGTTCAGAAGGCTGATCGTGAGAAAGTCAGGAGGGATCGGTTGAATGATCAGTTTCATGAATTGGGAAACGCGTTAGATCCTGATAGACCGCGGAACGACAAAGCAACCATCATCTCGGAGACAATCCAAGTGTTGAAAGACATAACTGCTGAAGTTGATAAGCTGAAAACAGAACATAAAGCGCTTTCTGAGGAGTCGCGCGAACTAATCCAAGAAAAGAATGAGCTCCGAGAAGAGAAAGCATCGTTAAGATCCGATATAGAAAATCTTAATTCGCAGTATCAGCAGAGAGTCAGAGTCATGCCTCCATGGACTGGAATGGATCCTTCTGTTGTCATGAGTAGCCCTTATCCATATCCAGTTCCTATATCAATCCCTCCTGCTCCAGTTTCCATTCACCCACATATGCAACCTTTTCCCTACTTTGGAAACCCGAATCCTGGTCATATTCCGAGTCTATGCTCAATGTATATTCCATTCTCGGCTCCGGCTAACGTTCCAATCGAGATGCCATCAACTCAGTATGCCTCTACATCGCACTTGTTGAATCGAAAAGAGTCGCGGAACAAGTCACCGGGTCATAGAAGACCTAGTGATGCAAAAAGAAGTAGTGTGTCTCCTGATGTGGCGACAGAACTTGAGCTTAAGATGCCTGGATCATCAACACAACAGGATTCCATGTCTGGAGGAAGGAAGGGCAAGCATTCGGTGATGAGTGACAGAATCATCATAGATGAGAGTGCTTCGAGCCGGTATTCTCCATCTCAAGGACCTCAAGATAGCTTTGACAGCGTCGAACACACTCCAAAGGCTGTTGATTGA 981 0.4699 MNQRHHPPPLNSSKTPPSAVAPDSPPQHVITNRKDTVRERSEVESHDPTVARKVQKADREKVRRDRLNDQFHELGNALDPDRPRNDKATIISETIQVLKDITAEVDKLKTEHKALSEESRELIQEKNELREEKASLRSDIENLNSQYQQRVRVMPPWTGMDPSVVMSSPYPYPVPISIPPAPVSIHPHMQPFPYFGNPNPGHIPSLCSMYIPFSAPANVPIEMPSTQYASTSHLLNRKESRNKSPGHRRPSDAKRSSVSPDVATELELKMPGSSTQQDSMSGGRKGKHSVMSDRIIIDESASSRYSPSQGPQDSFDSVEHTPKAVD 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04430 326 PANTHER TRANSCRIPTION FACTOR BHLH121 12 322 IPR044579 GO:0003700|GO:0006879
Vivi4g04430 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 101 IPR011598 GO:0046983
Vivi4g04430 326 CDD bHLH_AtILR3_like 56 130 - -
Vivi4g04430 326 MobiDBLite consensus disorder prediction 269 283 - -
Vivi4g04430 326 MobiDBLite consensus disorder prediction 1 85 - -
Vivi4g04430 326 SMART finulus 57 107 IPR011598 GO:0046983
Vivi4g04430 326 MobiDBLite consensus disorder prediction 233 326 - -
Vivi4g04430 326 Gene3D - 50 134 IPR036638 GO:0046983
Vivi4g04430 326 MobiDBLite consensus disorder prediction 236 255 - -
Vivi4g04430 326 Coils Coil 91 146 - -
Vivi4g04430 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 120 IPR036638 GO:0046983
Vivi4g04430 326 MobiDBLite consensus disorder prediction 299 316 - -
Vivi4g04430 326 MobiDBLite consensus disorder prediction 32 85 - -
Vivi4g04430 326 Pfam Helix-loop-helix DNA-binding domain 52 100 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04430 Vivi-Chr4 171098875 171100762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04430 51 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 50.000 5.58e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi4g04430 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04430 - - adu:107487484 375.941