Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04424 ATGACTGTTGCTGGAGTGATATCTGATGTTATTGTTGATGATGATCAAGTGGAGAGTGTTGCTTCGGATATCTCTTCGTCTTCGGTACACCGGGACCGGATTATAATTGTGGCGAATCAGCTTCCTATTAAGGCTCACAAGAATCAAGATGGTGATAGGAGTTTTTGGTCTTTTGATTGGGATGAAAATTCACTTCTTCAATTGAAAGATGGAATAGGGGATGATGATATTGAGATTATTTATGTTGGATGCTTAAAAGAAGATGTTCATCCAAATGAACAAGATGAGGTATCAATGATGCTTCTTGAGAATTACAAATGTGTCCCTACTTTTCTTCCGCCGGAGATGTTTACTAAGTACTATCATGGTTTTTGCAAACAACAATTATGGCCATTGTTTCATTACATGTTGCCGTTATCACCCGAGCTTGGTGGTAGGTTTAATCGGTCTTTATGGCAAGCTTATGTATCGGTTAATAAGATTTTTGCTGATAGGATTATGGAAGTTATTAACCCGGAAGATGATTTTGTTTGGATACATGATTATCATCTTATGGTGTTACCGACTTTCTTGAGGAAGAGGTTTAATCGGGTGAAACTTGGATTTTTCCTTCATAGTCCATTTCCTTCATCGGAAATTTACAAAACATTGCCTATTAGGGAGGAGCTATTGAGAGCTTTACTTAATTCGGATTTGATCGGGTTTCATACGTTTGATTATGCACGGCATTTCCTCTCGTGTTGTAGTCGGATGCTAGGTCTTACCTACGAATCCAAGCGGGGGTATATCGGAATTGAGTATTATGGTAGGACTGTTAGTATCAAGATTCTTCCGGTTGGTATACACATGGGTCAGATTCAATCGGTTTTAAGGTTAAAAGAAACTGAGGAAAAAGTTTGCGAGCTGATTCGACAGTTTTTGGATCAAGGAAGGACAATGTTGCTTGGTGTAGATGATATGGATATATTCAAGGGAATAACTTTGAAGCTTTTGGCAATGGAGCAGCTTCTCATTCAGCATCCAGAGTATCGAGGAAAAGTGGTATTAGTTCAGATAGCGAATCCTGCTAGGGGGCGAGGAAAAGATGTGCAAGAAATGCAAGATGAGACGAAGGCAACGGTAAAACGGATCAACGAAACGTTTAGGGAACCAGGGTACGATCCTGTTATTTTGATTGACGAGCCATTAAAGTTTTATGAAAGAGTTGCTTATTATGTTGTTGCCGAGTGTTGTTTAGTCACTGCGGTAAGGGACGGAATGAATCTCATACCGTACGAATATATAGTCAGCCGTCAAGGAAATGAAACTTTGGATAAAGTTTTGAAGATAGGTTCCTCCCCTAAGAAAAAGAGCATGTTAGTTGTGTCTGAATTCATTGGTTGTTCACCGTCTTTAAGCGGCGCAATCAGAGTGAACCCTTGGAACATTGATGCCGTGGCCGATGCAATGGATTCTGCGTTAGGAATGGCCGATTCGGAAAAACAGCTTCGACATGAAAAGCATTATAGATATGTTAGTACTCATGATGTCGGGTATTGGGCGCGTAGCTTTTTACAGGATTTGGAAAGGGCTTGTAGCGATCATGTACAACGAAGGTGGTGGGGAATTGGGTTTGGATTAAGTTTTAAAGTCGTAGCACTTGATCCAAACTTTAGGAAGCTCTCAATGGATCACATAGTTTCAGCTTACAAACGGACGGCAAATAGAGCTATCCTTCTAGACTACGACGGTACACTAATGCCTCAGGTTTCCATCGATAAGAGTCCAACAGATAAAACCATTGAAATTCTTAATAGCTTGTGTAGAGATAAGAACAACATGGTATTTCTTGTTAGTGCGAGAAGCCGAAAGATACTCTCGGAATGGTTTTCTCCTTGTGAGAATATAGGAATCGCGGCTGAGCACGGTTACTTTCTGAGAATGAAGCGAGACGACGAATGGGAAACCTGTGTTCCTGCAACCGATTGTAGTTGGAAACAAATCGCAGAGCCTGTTATGAAACTTTATACCGAAACAACTGATGGATCCACCATTGAAGATAAAGAGACTGCACTTGTTTGGTGGTATGAGGATGCAGATCCAGATTTCGGATCATGCCAAGCTAAAGAACTTCTCGATCATCTCGAAAGCGTGCTGGCAAATGAACCGGTGACTGTGAAAAGTGGCCAGAATTATGTCGAGGTTAAACCACAGGGTGTGAGCAAGGGAATAGTGGCGAAACGTCTACTTTCATCGATGGAAGAAAAGGGAATGTCACCTGACTTTGTTTTGTGCATAGGAGACGACAGATCCGACGAAGACATGTTCGAGGTAATCACGAGCTCGATGAACGGTCCAATAGCACCGAAAGCGGAAGTATTTGCTTGCACGGTTTGTCGGAAACCGAGTAAGGCTAAGTACTATCTTGATGATACTGCTGAAATAGTGAGATTGATTCAAGGCTTAGCTTGTGTTTCAGATCAGAAAGTCTTAAGCTAA 2478 0.4132 MTVAGVISDVIVDDDQVESVASDISSSSVHRDRIIIVANQLPIKAHKNQDGDRSFWSFDWDENSLLQLKDGIGDDDIEIIYVGCLKEDVHPNEQDEVSMMLLENYKCVPTFLPPEMFTKYYHGFCKQQLWPLFHYMLPLSPELGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTVSIKILPVGIHMGQIQSVLRLKETEEKVCELIRQFLDQGRTMLLGVDDMDIFKGITLKLLAMEQLLIQHPEYRGKVVLVQIANPARGRGKDVQEMQDETKATVKRINETFREPGYDPVILIDEPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIVSRQGNETLDKVLKIGSSPKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALGMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERACSDHVQRRWWGIGFGLSFKVVALDPNFRKLSMDHIVSAYKRTANRAILLDYDGTLMPQVSIDKSPTDKTIEILNSLCRDKNNMVFLVSARSRKILSEWFSPCENIGIAAEHGYFLRMKRDDEWETCVPATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWWYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNYVEVKPQGVSKGIVAKRLLSSMEEKGMSPDFVLCIGDDRSDEDMFEVITSSMNGPIAPKAEVFACTVCRKPSKAKYYLDDTAEIVRLIQGLACVSDQKVLS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04424 825 Gene3D - 698 824 IPR023214 -
Vivi4g04424 825 Gene3D - 568 684 IPR023214 -
Vivi4g04424 825 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 26 287 - -
Vivi4g04424 825 FunFam Trehalose-6-phosphate synthase 10 699 825 - -
Vivi4g04424 825 NCBIfam trehalose-phosphatase 568 815 IPR003337 GO:0003824|GO:0005992
Vivi4g04424 825 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 22 816 IPR001830 GO:0003824|GO:0005992
Vivi4g04424 825 Gene3D Glycogen Phosphorylase B; 288 506 - -
Vivi4g04424 825 CDD HAD_TPP 570 810 - -
Vivi4g04424 825 Pfam Glycosyltransferase family 20 33 522 IPR001830 GO:0003824|GO:0005992
Vivi4g04424 825 NCBIfam HAD-IIB family hydrolase 571 772 IPR006379 -
Vivi4g04424 825 Pfam Trehalose-phosphatase 572 805 IPR003337 GO:0003824|GO:0005992
Vivi4g04424 825 CDD GT20_TPS 33 522 IPR001830 GO:0003824|GO:0005992
Vivi4g04424 825 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 568 685 - -
Vivi4g04424 825 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 32 525 - -
Vivi4g04424 825 Gene3D Glycogen Phosphorylase B; 25 287 - -
Vivi4g04424 825 FunFam Alpha,alpha-trehalose-phosphate synthase 289 506 - -
Vivi4g04424 825 SUPERFAMILY HAD-like 569 816 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04424 Vivi-Chr4 171024479 171027947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04424 1 821 Trehalose Biosynthesis Gene Families AT1G68020 79.760 0.0 1380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04424 K16055 - gmx:100818822 1470.29