Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04421 ATGGAGGAGGGTAAAGAATTTGGAATGAGAAAAGAGGTTGAAGAAAGTCATGTTGGAAAAGAAATAGAAAATGATCAAGAGGCTATAAAGAAGATTATTGCAAGCCATCCTTTATTTGAAGTTTTGATTGAGTCTCACATTAACTGTTTGAAGGTAGGATCTGAGGATGCAGGTGAGTTTGATATAAAACGTGATGCATGGAAGAAAATGGTGAACACAAAGTCCAAAGAAACTTCTAGTCCAAACACTTCAGAGCTTGATCACTTCATGGAAGCATATTGCATGGCACTGGACAAGCTCAAAGAAGTGATAGAGGAACCAACTAAAGAAGCAAATGCTTTCATCAATTCGACCTATATTCAACTCAAAGAACTTGATGAAGGAAATAACCTAGCAACTTAA 402 0.3657 MEEGKEFGMRKEVEESHVGKEIENDQEAIKKIIASHPLFEVLIESHINCLKVGSEDAGEFDIKRDAWKKMVNTKSKETSSPNTSELDHFMEAYCMALDKLKEVIEEPTKEANAFINSTYIQLKELDEGNNLAT 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04421 133 SMART KNOX1_2 27 68 IPR005540 GO:0003677|GO:0005634
Vivi4g04421 133 Pfam KNOX2 domain 84 125 IPR005541 GO:0003677|GO:0005634
Vivi4g04421 133 Pfam KNOX1 domain 28 53 IPR005540 GO:0003677|GO:0005634
Vivi4g04421 133 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 9 129 - -
Vivi4g04421 133 SMART KNOX2_2 76 127 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04421 Vivi-Chr4 170984767 170986101 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04421 24 125 Homeobox Transcription Factor Family AT4G08150 32.381 5.26e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04421 - - tpra:123892941 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04421 4 170984767 170986101 Vivi4g04421 4 170984767 170986101 ECH