Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04404 ATGGCTTTCGGAGTTTCCTACGTTCTTCATCTCGTTCTACTGTTTTCTACGATCTTTGTCTCTGCTTGGTCTCAAGACGGTGCCGTGATGCAAAAGCTGAAAGCTTCATTCAACTCAAGCCGTTCTCTTGATTGGTCCGATTCAGATTATTGCAAATGGAAGGAAGTTGGATGTTCTTCTGATTCAAGGGTTACGAGAATCGACATTCAAAGGCATGATCTCACAGGCTCTCTACCGAAAGAATTGGTGCAACTCACTGCTTTGACAGATTTTTCTTGCAATCAGAACAATTTGTCTGGAGATTTTCCTAACATGCCGAGTTCTCTTCAGAATTTGTATATTAACCAGAACAAATTCACGTCGATGCCGAGCGATTTCTTTGATGATATGAGTAATTTGTTATTAGTGACTATTGGTGATAATCCTTTCACTCCATGGCAAATTCCTACTAGTCTTACAAAGTGTTTAGCCTTGAAGACTTTTTCTGCTAATAGTGCTAGTTTTGTTGGTGAAATCCCTGAAATCTTTGGGAAAGATAATTTTCCTAGTTTGGTTAGTTTGCAATTGTCTTACAATTATCTTGAGGGTAGTTTGCCTAATAGTTTAGCTGGTACTTCTATAGACACCCTTTGGCTGAATGGTCAAAATAGTACCAATGGTCAAAGTAAACTAAATGGTACTCTTTCTGTTATAGAAAAGATGACATCTTTGAAACAGCTTTGGGTTAATGTAAATTCTTTTACTGGTCCTATACCTGATTTATCAAATCTTACTCAATTAACCTATGCTTGTTTTAGGGATAATAGATTAACTGGTGTTGTTCCGCCGACTTTGACATCTCTTCCAAGTTTGCGAATTGTGAACTTGACAAACAATCAACTTCAAGGGTCACCTCCTAAGTTTAAAGATGGTGTCGCGGTTGAGAATGATTTGAGTGGGAGTAATAGTTTTTGTACTCAGGTTGTTGGTCAACCATGTAGTCCAGTTGTTAATGCTTTGCTTTCTGTTGTTGAACCTCTTGGATATCCTTATATACTTGCTCAGAGTTGGAAAGGGAATGATCCTTGTGGTGGTGGTTCTTGGAGAGGGGTTGTTTGTTCCGGTGGTAATGTTTCAATTATCGACTTTCGTAACCTGGGTTTTTCTGGTAGTATATCTCCTAGTTTTGTAAGGCTTAGTTCTGTGACGAAGTTGCTTCTTTCTAACAATAATCTCACCGGTACTATACCTAAGGAGCTTGCTGATATGCCGGCTTTGAAAGAGATAGATGTTTCGAATAATTCGTTGTATGGTCAGATACCGACGTTCCGTGGAGATGTGGTTGTTAATACTGCTGGGAATCCGGATATTGGACATGATAAACCTTCTAGCCCGCCCAGTCCTAGTTCTGGAGGCAACGATAAGAAGAAATTTAGTGTTGGAGCTATTGTTGGTGTTGTGATTGGGGTTGTTTGCTTACTTGGTGTAGGGGTTTTGGTGTTTGTTATGTGCCGTAGAAAGCGTAATAAGCGTAGTGGCAAAGTTCAAACTCCAAATGCAATAGTGGTACATCCTCGTCATTCTGGAGATGGAAATGCTGTGAAGATAAGTGTTGCAGCGGCAGGAGGATCTCATGCTGGTGGTGTAGGAGGAACTAGTGGATTTAGTCAATCTAGTAGTGTTCAAAATGTGGAAGCTGGTAATATGGTGATTTCGATTCAAGTTTTGAGAGAAGTTACGAACAATTTCAGTGAAAAAAACATTTTGGGGAAGGGCGGTTTCGGCACTGTGTACAAAGGAGAATTGGATGATGGAACAAAGATTGCAGTTAAAAGGATGCAATCTGATATGGGTGGTGACAAAGGGCTGAATGAGTTCAAGTCTGAAATTGCGGTTCTTACTAAGGTTCGCCACAGGCATTTGGTTGCACTTCTTGGCTATTGCTTGGAGGACAATGAGAAACTTCTTGTCTATGAATACATGCCTCAGGGCACTCTTAGTGAACATCTGTTCGATTTGAAAGACAATGGGGTGAAGCCACTAGAATGGAAGAGAAGGCTTTCTATTGCCTTAGATGTTGCTAGAGGTGTTGAGTATCTTCATGGTTTAGCACAGCAAATTTTCATCCATAGGGATTTGAAACCGTCAAATATCCTGCTTGGGGATGATATGCGCGCTAAAGTATCTGATTTTGGACTGGTTCGGCTTGCTCCTGAAGGACAAGCTTCGTTCGAGACTAGACTTGCCGGAACTTTTGGATATCTAGCACCAGAGTATGCAGTCACCGGACGAGTCACCACAAAGGTTGATGTATACAGCTACGGCGTGATTCTTATGGAGATGATTACAGGAAGGAGAGCAATCGACAACAGCCAACCAGACGAGAACATCCACCTTGTTACATGGTTCCGCAGAACGCAACTGAACAAAGACTCGTTCGAAAAGGTCATTGATCCAGCAATGGATATCGACGAGGAAGGCTTGGAGAGTTTCAGGACTATTGCAGGGTTGGCCAGCCACTGTTGTGCAAGGGAGCCTCATCAGCGTCCTGACATGGGACACGTGGTGAATGCGCTAGCACCTCTTGTCGAGATTTGGAAGCCGTCTGAACCTGATGCCGAGGACATGTACGGGATTGACTTGGATATGAGTTTGCCTCAAGCTCTAAGTAAGTGGCAGAATATGGAAGGGCGGAGCTCTACATTCGATGTTTCGTATTCTTCGTCGATGATTCCTAGTTGTGAGAATACACAGTCGAGTATACCGCCTCGGTCTCCTGGATTCGCTGATTCTTTTACATCTGCTGATGCGCGATGA 2796 0.4235 MAFGVSYVLHLVLLFSTIFVSAWSQDGAVMQKLKASFNSSRSLDWSDSDYCKWKEVGCSSDSRVTRIDIQRHDLTGSLPKELVQLTALTDFSCNQNNLSGDFPNMPSSLQNLYINQNKFTSMPSDFFDDMSNLLLVTIGDNPFTPWQIPTSLTKCLALKTFSANSASFVGEIPEIFGKDNFPSLVSLQLSYNYLEGSLPNSLAGTSIDTLWLNGQNSTNGQSKLNGTLSVIEKMTSLKQLWVNVNSFTGPIPDLSNLTQLTYACFRDNRLTGVVPPTLTSLPSLRIVNLTNNQLQGSPPKFKDGVAVENDLSGSNSFCTQVVGQPCSPVVNALLSVVEPLGYPYILAQSWKGNDPCGGGSWRGVVCSGGNVSIIDFRNLGFSGSISPSFVRLSSVTKLLLSNNNLTGTIPKELADMPALKEIDVSNNSLYGQIPTFRGDVVVNTAGNPDIGHDKPSSPPSPSSGGNDKKKFSVGAIVGVVIGVVCLLGVGVLVFVMCRRKRNKRSGKVQTPNAIVVHPRHSGDGNAVKISVAAAGGSHAGGVGGTSGFSQSSSVQNVEAGNMVISIQVLREVTNNFSEKNILGKGGFGTVYKGELDDGTKIAVKRMQSDMGGDKGLNEFKSEIAVLTKVRHRHLVALLGYCLEDNEKLLVYEYMPQGTLSEHLFDLKDNGVKPLEWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRRAIDNSQPDENIHLVTWFRRTQLNKDSFEKVIDPAMDIDEEGLESFRTIAGLASHCCAREPHQRPDMGHVVNALAPLVEIWKPSEPDAEDMYGIDLDMSLPQALSKWQNMEGRSSTFDVSYSSSMIPSCENTQSSIPPRSPGFADSFTSADAR 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04404 931 MobiDBLite consensus disorder prediction 444 467 - -
Vivi4g04404 931 Gene3D Ribonuclease Inhibitor 23 324 IPR032675 -
Vivi4g04404 931 FunFam receptor protein kinase TMK1 654 871 - -
Vivi4g04404 931 FunFam receptor protein kinase TMK1 542 653 - -
Vivi4g04404 931 FunFam Leucine-rich repeat receptor-like kinase 328 453 - -
Vivi4g04404 931 Gene3D Phosphorylase Kinase; domain 1 543 653 - -
Vivi4g04404 931 SUPERFAMILY L domain-like 35 434 - -
Vivi4g04404 931 Pfam Leucine rich repeat 388 429 IPR001611 GO:0005515
Vivi4g04404 931 FunFam Receptor-like kinase TMK4 24 323 - -
Vivi4g04404 931 MobiDBLite consensus disorder prediction 904 920 - -
Vivi4g04404 931 ProSiteProfiles Protein kinase domain profile. 576 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04404 931 Gene3D Transferase(Phosphotransferase) domain 1 654 868 - -
Vivi4g04404 931 SUPERFAMILY Protein kinase-like (PK-like) 564 879 IPR011009 -
Vivi4g04404 931 Pfam Leucine rich repeat N-terminal domain 25 59 IPR013210 -
Vivi4g04404 931 Pfam Leucine rich repeat N-terminal domain 347 367 IPR013210 -
Vivi4g04404 931 Pfam Protein kinase domain 577 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04404 931 CDD STKc_IRAK 582 855 - -
Vivi4g04404 931 Gene3D Ribonuclease Inhibitor 329 454 IPR032675 -
Vivi4g04404 931 ProSitePatterns Protein kinases ATP-binding region signature. 582 604 IPR017441 GO:0005524
Vivi4g04404 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 701 713 IPR008271 GO:0004672|GO:0006468
Vivi4g04404 931 MobiDBLite consensus disorder prediction 904 931 - -
Vivi4g04404 931 SMART LRR_typ_2 181 204 IPR003591 -
Vivi4g04404 931 SMART LRR_typ_2 281 303 IPR003591 -
Vivi4g04404 931 SMART LRR_typ_2 416 438 IPR003591 -
Vivi4g04404 931 SMART LRR_typ_2 107 129 IPR003591 -
Vivi4g04404 931 SMART LRR_typ_2 392 415 IPR003591 -
Vivi4g04404 931 SMART serkin_6 576 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04404 931 PANTHER OSJNBA0070M12.3 PROTEIN 10 931 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04404 Vivi-Chr4 170768776 170773061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04404 67 852 Receptor kinase-like Gene Family AT5G07280 31.604 3.95e-84 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vivi4g04404 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04404 K00924 - gmx:100776064 1211.05